Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1912
         (778 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U25128-1|AAC50157.1|  550|Homo sapiens PTH2 parathyroid hormone ...    30   8.1  
BC036811-1|AAH36811.2|  550|Homo sapiens parathyroid hormone rec...    30   8.1  
AY497546-1|AAR90849.1|  550|Homo sapiens parathyroid hormone rec...    30   8.1  
AC012362-2|AAY14871.1|  327|Homo sapiens unknown protein.              30   8.1  

>U25128-1|AAC50157.1|  550|Homo sapiens PTH2 parathyroid hormone
           receptor protein.
          Length = 550

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 324 VAASHSNMHGVWSRLSSKQKTW*NI*KSALILFPEIS 214
           VA  H N +G W  + S  KTW N       L P+IS
Sbjct: 98  VAFRHCNPNGTWDFMHSLNKTWANYSDCLRFLQPDIS 134


>BC036811-1|AAH36811.2|  550|Homo sapiens parathyroid hormone
           receptor 2 protein.
          Length = 550

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 324 VAASHSNMHGVWSRLSSKQKTW*NI*KSALILFPEIS 214
           VA  H N +G W  + S  KTW N       L P+IS
Sbjct: 98  VAFRHCNPNGTWDFMHSLNKTWANYSDCLRFLQPDIS 134


>AY497546-1|AAR90849.1|  550|Homo sapiens parathyroid hormone
           receptor 2 precursor protein.
          Length = 550

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 324 VAASHSNMHGVWSRLSSKQKTW*NI*KSALILFPEIS 214
           VA  H N +G W  + S  KTW N       L P+IS
Sbjct: 98  VAFRHCNPNGTWDFMHSLNKTWANYSDCLRFLQPDIS 134


>AC012362-2|AAY14871.1|  327|Homo sapiens unknown protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 324 VAASHSNMHGVWSRLSSKQKTW*NI*KSALILFPEIS 214
           VA  H N +G W  + S  KTW N       L P+IS
Sbjct: 98  VAFRHCNPNGTWDFMHSLNKTWANYSDCLRFLQPDIS 134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,929,460
Number of Sequences: 237096
Number of extensions: 2520109
Number of successful extensions: 3900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3900
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)