Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1912
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068710-4|AAK72089.3|  340|Caenorhabditis elegans Serpentine re...    30   2.1  
AF125961-2|AAD14739.1|  343|Caenorhabditis elegans Serpentine re...    29   2.8  
Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AF068710-4|AAK72089.3|  340|Caenorhabditis elegans Serpentine
           receptor, class j protein16 protein.
          Length = 340

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 187 FIFWFRYIGPFVYLIIDFIKLPIF-YIIVVKPKSKPYTK 74
           +I W  Y  P ++ I+ F+  PIF Y+IV + KS    K
Sbjct: 2   YIHWTHYYLPKMFGILSFVVNPIFMYLIVTEQKSSSIGK 40


>AF125961-2|AAD14739.1|  343|Caenorhabditis elegans Serpentine
           receptor, class j protein15 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 187 FIFWFRYIGPFVYLIIDFIKLPIF-YIIVVKPKSKPYTK 74
           +I W  +  P ++ I+ F+  PIF Y+IV + KS    K
Sbjct: 2   YIHWTNHYFPKIFGILSFVANPIFMYLIVTEQKSNSIGK 40


>Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical
           protein F21H7.7 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/38 (23%), Positives = 24/38 (63%)
 Frame = -1

Query: 235 NSVPRNKLQ*QNLRRQFIFWFRYIGPFVYLIIDFIKLP 122
           +S+P+N+ +    + +F+++F    PF+ ++I  + +P
Sbjct: 136 SSLPQNRFRISRRKIKFLYYFFVFLPFILIVIFLLNIP 173


>Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical
           protein C44B9.1 protein.
          Length = 954

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 559 KLLRSRTQAAITCLGLVTYPTKGLKRAAYKLTATSL---*VTRIHQQCTIRDLSFDILI 726
           K L   T    TCLGL+ Y  K +     K+T T++     T  H + TI + +F + I
Sbjct: 165 KALALATSQTRTCLGLIAYKNKKIVLNQLKMTLTTIKGFHETEQHIRETIEEGNFPLAI 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,973,963
Number of Sequences: 27780
Number of extensions: 380027
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)