Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1910
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    29   0.66 
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   4.6  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.1  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   8.1  

>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 182 PKKHCLTRVELLYFSCLKPFGNCQHTKKSRVEFATSL 72
           P +HC + ++ +Y +C+ P  +  +    +V+F TS+
Sbjct: 243 PDEHCNSWIQRIYITCVLPRNHYIYLLNEQVDFLTSI 279


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 179 KKHC-LTRVELLYFSCLKPFGNCQHTKKSRVEFATSLITDEKRLGTRK 39
           KKH  LT+ ELL   CL    +C+  K+S V    + + D K+L   K
Sbjct: 279 KKHSNLTKEELL-LRCLTLTTSCRQIKRSSVVSLCNSVFDGKKLTIAK 325


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 261 KNMENDINKPYKICDVNREKKKGIVAMSLEDLLIKV 368
           K  E  + K Y IC  +  K+      SLE+LL+K+
Sbjct: 67  KEREEHLEKIYVICTRHYAKRISENVASLEELLLKI 102


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 339 MSLEDLLIKVPEKLGMPSENLTVVLESDGTEV 434
           M+LE  +  + E+LG+  ENL  +++++  E+
Sbjct: 278 MNLEKAVKMIIERLGLLDENLAPIVDTNNVEL 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,330
Number of Sequences: 5004
Number of extensions: 64074
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)