Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1910
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 30 1.6
03_06_0639 - 35227780-35227813,35227963-35228099,35228505-35229449 30 2.1
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974... 29 4.8
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 28 6.4
03_06_0406 - 33703767-33704045,33705167-33705226,33705295-337053... 28 6.4
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906... 28 8.4
04_01_0447 - 5817333-5817341,5819044-5819335,5819833-5820029 28 8.4
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 28 8.4
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 387 PSENLTVVLESDGTEVDDEEYFSTLDPDTSLM 482
PS L ++ ESDG V DEE F LD +T ++
Sbjct: 656 PSSQLNLIPESDGLTVSDEE-FDGLDEETIMV 686
>03_06_0639 - 35227780-35227813,35227963-35228099,35228505-35229449
Length = 371
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 351 DLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLDPDTSLMILHGNEKWVRTCLSVR 530
D+LIK P + +P ++ ++ESDG ++ S L PD + HG E+ V+ +S+
Sbjct: 80 DVLIKNPNPVPIPLVDIDYLIESDGRKL-----VSGLIPDAGTIHAHG-EETVKIPISLI 133
Query: 531 Y 533
Y
Sbjct: 134 Y 134
>01_06_1760 -
39697079-39697162,39697280-39697340,39697415-39697479,
39697579-39697860,39697938-39698012,39698121-39698195,
39698343-39698399,39698653-39698726,39698912-39699055,
39699608-39699662,39700027-39700149,39700276-39700320,
39701068-39701160,39701249-39701662
Length = 548
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 545 TDDIALGDKEQVAXLVGRLQHNLCHISLLGGQDLELLS 658
+ DIA D+E V L RL + +S + G DL L+S
Sbjct: 183 SQDIAFFDEETVGDLTSRLGSDCQQVSRVIGNDLNLIS 220
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 318 KKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEE 446
++ G ++E L+ + G PS NL +L + GTE ++ E
Sbjct: 61 ERSGSAPPTMEGSLVALGHLTGQPSGNLGAILPNLGTEANNSE 103
>03_06_0406 -
33703767-33704045,33705167-33705226,33705295-33705378,
33705991-33706093,33706427-33706487,33706993-33707026
Length = 206
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 269 HVFLLYTERKRRLFTYFDYKVKTDDEIPIPKKHCLTRVELLY 144
HVF Y K + ++D+K KT + P+ C V L+
Sbjct: 104 HVFFSYITVKLQFLGFYDFKSKTHQDACCPEGMCRAAVFALH 145
>07_03_0482 +
18589573-18589728,18589889-18590065,18590518-18590688,
18590913-18591029,18591614-18591742,18592210-18592311,
18592412-18592498,18592585-18592638,18594880-18595016,
18595181-18595235,18596133-18596188,18596275-18596334,
18596442-18596529,18596634-18597371,18597451-18597511,
18598301-18598403,18599180-18599311,18599393-18599477
Length = 835
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 345 LEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLDPDTSLMILHGNEK 503
L+ L +++ +P E +V+E+DG+ VDD + L+ + G E+
Sbjct: 33 LDILRLQIFSLTSVPPELQKIVVEADGSVVDDGTDLEAISEGLRLVAITGEEE 85
>04_01_0447 - 5817333-5817341,5819044-5819335,5819833-5820029
Length = 165
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 384 MPSENLTVVLESDGTEVDDEEYFSTLDPDTSLM 482
+P+ L ++ ES+G DEE F LD DT ++
Sbjct: 130 VPASQLNLIPESEGLTTSDEE-FDGLDEDTLMV 161
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 98 IFLYAGNYRKALDKKNTIVQPLSNSVSWESGFHH 199
IFL GN++ ++ + + Q ++NS S G +H
Sbjct: 282 IFLEVGNHQPSVPRMKQLAQTITNSSSGNLGLNH 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,949,539
Number of Sequences: 37544
Number of extensions: 365803
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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