Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1910
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone...    30   1.9  
U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone...    30   1.9  
U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone...    30   1.9  
U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone...    30   1.9  
U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone...    30   1.9  
AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear recep...    30   1.9  
AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear recep...    30   1.9  
Z81091-4|CAD56588.1|  287|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    28   5.7  

>U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform b protein.
          Length = 400

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 155 QPLSNSVSWESGFHHLFLLCNRNK*T 232
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 160 EPLPNTYSFEHAFYNPHLICNRTKLT 185


>U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform c protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 155 QPLSNSVSWESGFHHLFLLCNRNK*T 232
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 200 EPLPNTYSFEHAFYNPHLICNRTKLT 225


>U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform d protein.
          Length = 446

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 155 QPLSNSVSWESGFHHLFLLCNRNK*T 232
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 206 EPLPNTYSFEHAFYNPHLICNRTKLT 231


>U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform a protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 155 QPLSNSVSWESGFHHLFLLCNRNK*T 232
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 206 EPLPNTYSFEHAFYNPHLICNRTKLT 231


>U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform e protein.
          Length = 450

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 155 QPLSNSVSWESGFHHLFLLCNRNK*T 232
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 208 EPLPNTYSFEHAFYNPHLICNRTKLT 233


>AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-21b protein.
          Length = 400

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 155 QPLSNSVSWESGFHHLFLLCNRNK*T 232
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 160 EPLPNTYSFEHAFYNPHLICNRTKLT 185


>AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear receptor
           NHR-21a protein.
          Length = 458

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 155 QPLSNSVSWESGFHHLFLLCNRNK*T 232
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 218 EPLPNTYSFEHAFYNPHLICNRTKLT 243


>Z81091-4|CAD56588.1|  287|Caenorhabditis elegans Hypothetical
           protein F55H12.5 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +3

Query: 336 AMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLDPDTSLMILHGNEKWVRT 515
           A+ + D+L K  + LG P +   V++  DG        F  +D +   ++ HG  K   T
Sbjct: 195 AIEINDMLEKSRKYLGCPLKGPLVIVCKDGAAKSGLVAF--IDTEADRLMKHGKAKHTDT 252

Query: 516 CLSVRY 533
              +R+
Sbjct: 253 IKQIRF 258


>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
 Frame = -2

Query: 350 FKRHRDNSFLLFAINIANFIWFVNVVFHVFLLYTERKRRLFTYF---------DYKVKTD 198
           F+R+ + S ++  ++   FI   N     + +YT+    LFTY          D+     
Sbjct: 98  FQRNVNTSDVISIVHTFQFIIIFNRFPDPYSVYTKHNNTLFTYIFFSAADTCRDFDNNCR 157

Query: 197 DEIPIPKKHCLTRVELLYFSCLKPFGNC 114
           D I +    C    E +  SCLK  G C
Sbjct: 158 DWITVNPNAC-DSTEYIKRSCLKSCGQC 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,337,711
Number of Sequences: 27780
Number of extensions: 356985
Number of successful extensions: 916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)