Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1909
         (619 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    25   0.51 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   8.3  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   8.3  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 434 RSFPINRYASSVHLMTP 384
           R FP +RY    H MTP
Sbjct: 20  RQFPTDRYVGYYHFMTP 36


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 345 VHEASIINDNVNPVELLYCHHKCLF 271
           VHEASIIN      + +     C++
Sbjct: 163 VHEASIINFGYTLAKFMIFTSTCIY 187


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 277 AFVMTVEEFNRIDIVINNAGFMNDRLWE 360
           AFV  +++ N    ++ NA   N  LW+
Sbjct: 115 AFVFRLKQLNAKVEMLKNARVKNTALWK 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,955
Number of Sequences: 336
Number of extensions: 2984
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)