Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1909
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 52 5e-08
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 38 9e-04
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 34 0.014
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 34 0.019
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 33 0.044
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 32 0.058
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 31 0.10
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 30 0.23
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 30 0.31
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 30 0.31
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 30 0.31
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 29 0.54
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 29 0.71
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 27 1.6
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 27 1.6
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 27 2.2
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 27 2.2
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 27 2.2
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 27 2.2
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.9
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 3.8
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 5.0
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 25 6.6
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 25 6.6
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 25 8.8
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.8
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 52.4 bits (120), Expect = 5e-08
Identities = 24/70 (34%), Positives = 44/70 (62%)
Frame = +2
Query: 62 DLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSDRGEQVTEKLASKYGRKNVLFC 241
DL GKVAL+TG++ GIG + EL ++GAKV L + ++ ++V +++ + + F
Sbjct: 39 DLTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFL 98
Query: 242 RLDVMTIHNL 271
RLD++ ++
Sbjct: 99 RLDLLDFESV 108
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 38.3 bits (85), Expect = 9e-04
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 65 LKGKVALITGAASGIGLAYSEELLKQG-AKVSLCDIDSDRGEQVTEKLASKYGRKNVLFC 241
L GK LITGA+SGIG + + E+ K K+ L E++ ++L SKY +VL
Sbjct: 4 LDGKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFSTVEEIAKELESKY-EVSVLPL 62
Query: 242 RLDVMTIHNL 271
+LDV + ++
Sbjct: 63 KLDVSDLKSI 72
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +1
Query: 295 EEFNRIDIVINNAGFM--NDRLWELEVD 372
+EF ID++INNAG D++ +L +D
Sbjct: 81 KEFADIDVLINNAGLALGTDKVIDLNID 108
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 34.3 bits (75), Expect = 0.014
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 65 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSDRGEQVTEKLASKYG 220
LKGK LITG + GIG + ++ G+ V L + + + +L K+G
Sbjct: 7 LKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHG 58
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Frame = +1
Query: 292 VEEFN-RIDIVINNAGFM---------NDRLWELEVDVNLNG 387
VEE R+D++I NAG N+ +W V +NLNG
Sbjct: 82 VEELGGRLDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNG 123
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.019
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 59 MDLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSDRGEQVTEKLASKYGRKNVLF 238
+ LKGK A++ G A GIG A + GA + ++ GE+ +++A G K
Sbjct: 17 LSLKGKNAVVFGGARGIGHAICSVFAEAGANAFIV-YNTTPGEKAAKEIAQANGVKTYT- 74
Query: 239 CRLDV 253
C+ DV
Sbjct: 75 CKCDV 79
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 32.7 bits (71), Expect = 0.044
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 65 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSDRGEQVTEKLASKYG 220
LKGK ++ GAA GIG + + + G V + + +D E+ +KLA + G
Sbjct: 19 LKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEK-AKKLAEETG 69
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 32.3 bits (70), Expect = 0.058
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 59 MDLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDI 169
M ++G+V LITGAA GIG + + G +V+ DI
Sbjct: 1 MTVEGRVVLITGAAGGIGKVLCKMFTELGDRVAGIDI 37
Score = 28.3 bits (60), Expect = 0.94
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 265 QFEEAFVMTVEEFNRIDIVINNAGFMNDRLWE 360
Q E A ++ ID++INNAG +D +E
Sbjct: 59 QIETAIEKVIQTLGPIDVLINNAGLADDTPFE 90
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 31.5 bits (68), Expect = 0.10
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +2
Query: 5 AKLVTSHF*ARCFYSSINMDLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSDRG 184
A V F A+ S+ KG A++TGA GIG Y+ +L G V L ++
Sbjct: 35 ASFVYKTFFAKGVKLSVYGAKKGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKL 94
Query: 185 EQVTEKL 205
+ + ++L
Sbjct: 95 DALAKEL 101
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 65 LKGKVALITGAASGIGLAYSEELLKQGAKV 154
+ G V ++TG +SGIG E+L GA+V
Sbjct: 73 MNGMVVMVTGGSSGIGQVVVEKLASLGAQV 102
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 29.9 bits (64), Expect = 0.31
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 226 KRFVLSIRCYDYPQFEEAFVMTVEEFNRIDIVINNAGF 339
K L + D E AF F +DIVINNAG+
Sbjct: 48 KLLKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNAGY 85
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 83 LITGAASGIGLAYSEELLKQGAKVSLC 163
LITG++ G+G A + L QG V C
Sbjct: 9 LITGSSKGLGYALVKVGLAQGYNVIAC 35
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 29.9 bits (64), Expect = 0.31
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 65 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSDRGE-QVTEKLASKYGR 223
L K L+TG SGIG A + ++G+ + + + +R + +VT L + GR
Sbjct: 40 LAEKKTLLTGGDSGIGKAAAVMFAREGSDLVISCLPEERDDAEVTRDLIEREGR 93
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 29.9 bits (64), Expect = 0.31
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 74 KVALITGAASGIGLAYSEELLKQGAKV 154
KV L+TG++ GIGLA +E L K+ AKV
Sbjct: 7 KVILLTGSSKGIGLATAEALQKK-AKV 32
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 29.1 bits (62), Expect = 0.54
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 83 LITGAASGIGLAYSEELLKQGAKVSL 160
L+TG + G+G A ++EL+ +GA V++
Sbjct: 26 LVTGGSQGLGKAIAKELVLRGANVTI 51
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 65 LKGKVALITGAASGIGLAYSEELLKQGAKV 154
+ GK+ L+TG IG +E+LL+ G +V
Sbjct: 1 MSGKLVLVTGVTGFIGAHVAEQLLQAGYRV 30
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 256 DYPQFEEAFVMTVEEFNRIDIVINNAGFMNDRLWELE 366
D P FE+ + +E+ N +DI+I +GF + ELE
Sbjct: 274 DVPNFED--ISKMEKENNLDIMIEASGFNKKQSKELE 308
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 495 VDSDLTATNYAIVGLTRAYGVQYHVNMTGVRCLVVCPGLT 614
VDS L+ NY +GLT G ++N ++CL C LT
Sbjct: 60 VDSSLSYENYQPIGLTN-LGNTCYMNCV-LQCLFACKDLT 97
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 345 VHEASIINDNVNPVELLYCHHKCLFKLWIVITSN 244
VHE S++ + P +L CH K WI + +N
Sbjct: 362 VHEKSVLLPLL-PTSILLCHGNITTKPWIALANN 394
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 27.1 bits (57), Expect = 2.2
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 256 DYPQFEEAFVMTVEEFNRIDIVINNAGF 339
++ +++ + F RID+++NNAG+
Sbjct: 25 NFSSIKKSVEKAISHFGRIDVLLNNAGY 52
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 38 CFYSSINMDLKGKVALITGAASGIGLAYSEELLKQGAKVSLC 163
C ++++GK A++ G ++ +G S L K A V+LC
Sbjct: 150 CILKHYGINVQGKHAVVIGRSNIVGRPMSILLEKANATVTLC 191
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 27.1 bits (57), Expect = 2.2
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 256 DYPQFEEAFVMTVEEFNRIDIVINNAGF 339
++ +++ + F RID+++NNAG+
Sbjct: 25 NFSSIKKSVEKAISHFGRIDVLLNNAGY 52
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 26.6 bits (56), Expect = 2.9
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = -2
Query: 444 LPSAILPHKPICEQRTSDDAIQINIDFEFPKPVVHEASIINDNVNPVELLYCHHK-CLFK 268
+P+AI PI ++ + + I + PKP + ++++ + P HHK L
Sbjct: 7 IPTAIQIQNPI------NNNVSVTISDQLPKPSANNPNLLSVDTRPTHRKGHHHKHSLSH 60
Query: 267 LWIVITSNRQ----NKTFFRPYFEASFSVTCSPR 178
+ + NRQ ++ P F+ +F++ P+
Sbjct: 61 QYFLPPKNRQPLEIPASYPIPTFKETFAILTFPQ 94
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 38 CFYSSINMDLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSDR 181
CFY+ N + K ITG GI + E+ L+ AK+ ++DR
Sbjct: 2438 CFYTGANSEWLHKNLFITGHPDGI-IRIWEKRLQSNAKLEAEKNNADR 2484
>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1079
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 128 ELLKQGAKVSLCDIDSDR-GEQVTEKLASKYGRKNVLFCRLDVMTIHNLK 274
E K+ A + D+ DR E + E+L K NV++ D T H K
Sbjct: 879 EKAKEYALMLCFDVKVDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQKK 928
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 177 SESMSHRETL---APCFNNSSL*AKPMPEAAPVINATFPFKS 61
+ES++H +++ +P N PE+APV N FP S
Sbjct: 452 NESLTHEQSINGNSPSPNEGVFQGSFSPESAPVNNHAFPHTS 493
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 83 LITGAASGIGLAYSEELLKQGAKVSLCDIDSDRG 184
L+ G SG GLA + K GAKV+L + G
Sbjct: 11 LVIGGGSG-GLASARRAAKHGAKVALIEASGRLG 43
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 74 KVALITGAASGIGLAYSEELLK 139
K ALITG+ SG+G + LL+
Sbjct: 5 KYALITGSNSGLGFGIATRLLQ 26
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 205 RFKIWPKKRFVLSIRCYDYPQFEEAFVMTVEEFNR-IDIVI 324
R K P+KR LSI D +F ++ + +E R DIV+
Sbjct: 249 RAKKPPRKRITLSINQQDKDEFFDSLINNKKEVRRHFDIVM 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,845
Number of Sequences: 5004
Number of extensions: 49757
Number of successful extensions: 153
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -