Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1909
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    38   1e-04
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +2

Query: 74  KVALITGAASGIGLAYSEELLKQGAKVSLCDIDSDRGEQVTEKLASKYGRKNVLFCRL 247
           +VAL+TGA SGIG    E L+ +G KV       D+ + + E+L SK G+   L C L
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDL 65


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 599 HDEASHSGHIDVVLNPVSSGEANNSVVRCCEIGVDT*GLAKAVEAVFT 456
           H ++ H  HI+   + V SG+   SV++    G+   G+ + V+ V T
Sbjct: 806 HQQSHHGLHINSSPSSVQSGQQQQSVLQ----GLGVQGVQQGVQGVQT 849


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 241 SIRCYDYPQFEEAFVMTVEEFNRIDIVINNAGFMN-DRLWELEVDVNLNGVIRCT 402
           S+   +Y    + FV   ++ N     +N + F+N    ++   ++NLNG + CT
Sbjct: 107 SLGSENYTGISDLFVF--DDLNDYINRLNYSAFVNLTAYYDGGANLNLNGTVNCT 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,116
Number of Sequences: 438
Number of extensions: 3467
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)