Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1908
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.1  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.7  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   4.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 119 DDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNV 217
           +D LKNLE  ++KD   L  +    WP +  N+
Sbjct: 587 NDGLKNLEIHVTKDTDTLDNEMRGAWPLKLQNL 619


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 498 YAKYHRYPTLTIGEPFTAGLPFRH 569
           YA+YH YP    G P  AG+P ++
Sbjct: 173 YARYHPYP--NFGVP-PAGIPLQN 193


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 666 NAAGTLLLTIPAYSDTWSLNLPHSVTLLEH 755
           N  GT+L   P+  D   +NL HS  L  H
Sbjct: 285 NTLGTMLSIHPSKLDVEQMNLLHSNDLNMH 314


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 681 LLLTIPAYSDTWSLNLPHSVT 743
           L+L IPAY   W ++   S++
Sbjct: 285 LILGIPAYGRAWKMDEDSSIS 305


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 163 SGLETSRGQRLATAIFECRTNNS 231
           SGL   R +R  +A+F C   N+
Sbjct: 858 SGLSIKRTERSDSALFTCVATNA 880


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 405 SPAM*DGAATRVKNKNCIF 349
           +P + DG  TR K   C+F
Sbjct: 20  APLLDDGTRTRNKAAECVF 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,155
Number of Sequences: 336
Number of extensions: 4134
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)