Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1908
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228...    30   2.3  
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200...    30   2.3  
07_03_0581 + 19678266-19678949                                         29   4.1  
04_01_0348 + 4563391-4563689,4563965-4564145,4564186-4564467           29   5.4  
07_03_1240 + 25095472-25095942,25096021-25096314,25096563-250973...    28   9.5  
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759...    28   9.5  

>10_08_0824 +
           20821724-20822137,20822457-20822543,20822729-20822829,
           20822917-20822967,20823616-20823790,20823878-20824192,
           20824504-20824707,20824799-20825314,20825400-20825609,
           20826092-20826280,20827254-20827405,20827685-20827837,
           20827925-20828006,20828086-20828475
          Length = 1012

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 509 PQISDPDYWRTLHSW 553
           P  +D DYW TLHSW
Sbjct: 827 PMPNDGDYWSTLHSW 841


>08_02_0665 +
           19818500-19819013,19819169-19819260,19819435-19820056,
           19820575-19820775,19821327-19821395,19821428-19821522,
           19821608-19822153
          Length = 712

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 415 FYMPHGLTLDHHDNVWVTDVAKHQVYKYTPS 507
           F  P  L +DH DNV+V D     V K  PS
Sbjct: 379 FDRPRSLAVDHADNVYVADRMNGAVRKIAPS 409


>07_03_0581 + 19678266-19678949
          Length = 227

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/50 (28%), Positives = 30/50 (60%)
 Frame = -2

Query: 679 VPAALNFTI*LLQYPSATKISPVLAIATDVGMQNKTRCLNGRPAVKGSPI 530
           +PAAL+ ++ L +  S     P++   +++ ++ K R ++ +P+  GSPI
Sbjct: 58  LPAALSSSMALPRRSSHISSRPIIHCRSELAVEAKGRVVSKKPSGSGSPI 107


>04_01_0348 + 4563391-4563689,4563965-4564145,4564186-4564467
          Length = 253

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 573 VLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAY 704
           V+ C  + VAI S GEI +  G   + +    A+ +LL+  PA+
Sbjct: 34  VVHCRDSFVAIGSLGEISMFSGNNTDGVALLTASPSLLMPPPAH 77


>07_03_1240 +
           25095472-25095942,25096021-25096314,25096563-25097383,
           25097466-25097636,25097716-25098016
          Length = 685

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 484 DVLRRQLPTRYHDD--RG*GHEAYKKYKLPSYVGRSR 380
           D+LR+ L T+ H D  RG G +   K+ LP Y  + R
Sbjct: 180 DILRKALGTKEHPDRTRGIGSDVPWKHGLPQYSSQYR 216


>02_02_0186 +
           7594197-7594281,7594409-7594513,7595062-7595238,
           7595716-7595886,7596198-7596289,7596302-7596407,
           7597516-7597601,7597861-7598501,7599065-7599107
          Length = 501

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +3

Query: 579 FCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLL-----TIPAYSD 710
           F  PT VA+  TG ++VAD   N  I K   +G   +      IP Y D
Sbjct: 149 FKRPTGVAVDDTGNVYVAD-TANLAIRKIGESGVTTIAGGKSNIPGYRD 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,542,138
Number of Sequences: 37544
Number of extensions: 430240
Number of successful extensions: 1052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)