Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1908
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)            67   2e-11
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)                   60   3e-09
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.016
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)                   36   0.048
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)                       29   4.2  
SB_46407| Best HMM Match : CPSF_A (HMM E-Value=3.8e-11)                29   5.5  
SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)                    29   5.5  
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)             28   7.3  
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)                       28   7.3  
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)               28   9.6  
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   28   9.6  
SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.6  
SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   9.6  

>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
          Length = 821

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
 Frame = +1

Query: 250 GTPVIFHRADRVWDENTFNESNAYQNFD-KGPIVEDTILVLDPGSGSVLHSWGAYI-FYM 423
           G   I HRA R WD NTF E+      + + P+  + +L L+P S  V+   G+   F +
Sbjct: 195 GNVTILHRAGRPWDGNTFYENTDVLRKELREPLKTNVLLWLNPQSELVMREEGSKAGFVL 254

Query: 424 PHGLTLDHHDNVWVTDVAKHQV 489
           PHGL+ D H N+W TDV  HQV
Sbjct: 255 PHGLSFDQHGNMWATDVGLHQV 276



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 519 PTLTIGEPFTAGLPF-RHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAG 677
           P++ +G  +  G      ++ FC PT VA+   G IF+ADGYCN ++VK +  G
Sbjct: 529 PSMVLGTKYEPGSTLSEEKIQFCKPTDVAVDEEGNIFIADGYCNQRVVKLDKNG 582


>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
          Length = 750

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 415 FYMPHGLTLDHHDNVWVTDVAKHQVYKY 498
           FYMPHGLT+DH DN W+TDVA HQV+KY
Sbjct: 150 FYMPHGLTIDHEDNTWITDVALHQVHKY 177



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/56 (46%), Positives = 35/56 (62%)
 Frame = +3

Query: 519 PTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 686
           P L +GE    G   +H   FC P  VAI +TG  +VADGYCN++++KF+  G LL
Sbjct: 185 PVLVLGEMLRPGSDDKH---FCQPNDVAIETTGVFYVADGYCNSRVMKFSPEGKLL 237


>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +1

Query: 298  TFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAY-----IFYMPHGLTLDHHDNVW 462
            T N+    +  DK   + D  +  DP     + S+G        F +PHG+  D  DN++
Sbjct: 1448 TANDDGILERLDKSGDLVDNRIPTDPSLSRFVKSFGIAGGGDGCFNLPHGVATDPSDNIY 1507

Query: 463  VTDVAKHQVYKYTP 504
            V D    ++  +TP
Sbjct: 1508 VADSGNSRLQIFTP 1521



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 576  LFCMPTSVAIASTGEIFVADGYCNNQIVKFNAA 674
            L   PT VA+   G ++VAD + NN+I  F+ A
Sbjct: 1627 LMRFPTGVAVDKAGHLYVADTF-NNRIQVFSLA 1658


>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
          Length = 415

 Score = 35.5 bits (78), Expect = 0.048
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 418 YMPHGLTLDHHDNVWVTDVAKHQVYKYTPSTTDI-RP*LLANPSQLV 555
           + PHG+T+D  DN+ V D   H+++K+      I +  L+  PS +V
Sbjct: 348 WQPHGVTVDKDDNILVCDTGNHRLHKFNKDGDFIGKSDLIEEPSIIV 394


>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +1

Query: 352 DTILVLDPGSGSVLHSWGAY-----IFYMPHGLTLDHHDNVWVTDVAKHQVYKYTP 504
           DTI V DP SG  L+S G        F  P GL +D  D ++V D   H+V    P
Sbjct: 662 DTIQVFDP-SGDYLYSVGGTGHGEGRFREPRGLHVDARDRLFVCDSGNHRVQVMAP 716


>SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)
          Length = 839

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 522 TLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 644
           TLT+ E  TA + + H V +CM + +      E+F+  G C
Sbjct: 224 TLTL-ETLTAFVSYVHLVKYCMESGIPEKDASELFIFIGAC 263



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 522 TLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 644
           TLT+ E  TA + + H V +CM + +      E+F+  G C
Sbjct: 635 TLTL-ETLTAFVSYVHLVKYCMESGIPEKDASELFIFIGAC 674


>SB_46407| Best HMM Match : CPSF_A (HMM E-Value=3.8e-11)
          Length = 242

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 309 FVESIFVPYSICPVKYHGRPKELMDTAVICPTFKD 205
           F++ +F  YS+C   +  RP    DT VI  T KD
Sbjct: 42  FIDRLFFRYSVCVCSFSARPD---DTFVIVGTAKD 73


>SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)
          Length = 864

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 309 FVESIFVPYSICPVKYHGRPKELMDTAVICPTFKD 205
           F++ +F  YS+C   +  RP    DT VI  T KD
Sbjct: 800 FIDRLFFRYSVCVCSFSARPD---DTFVIVGTAKD 831


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 418 YMPHGLTLDHHD-NVWVTDVAKHQV 489
           + P+GLT+DH+D  ++ TD  +H +
Sbjct: 324 FWPNGLTIDHNDKRIYWTDAKQHHI 348


>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
          Length = 868

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 498 YAKYHRYPTLTIGEPFTAGLPFRHRVLFCMPT 593
           +  ++RYPTLT+  P      +RH  L+  PT
Sbjct: 788 HTSFYRYPTLTVTHP-PVSHTYRHTSLYRYPT 818


>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 1737

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
 Frame = +3

Query: 501  AKYHRYPTLTIGEPFTAGLPFRHRVLFCMP---TS-----VAIASTGEIFVADGYCNNQI 656
            ++Y+R+PT+T          +RH  +  +P   TS      AI     +     Y +N +
Sbjct: 1436 SRYYRHPTITDTPLLQTSHYYRHSAITDIPLLQTSRYYRHPAITDI-PLLQTSRYYDNLL 1494

Query: 657  VKFNA-AGTLLLTIPAYSDTWSLNLP 731
             +  A   TLLL  P Y+DT+ L  P
Sbjct: 1495 YRHPAITDTLLLQTPCYTDTFLLQTP 1520


>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
          Length = 527

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 470 TSQNIKYISIRQVPQISDPDY 532
           TSQNI++ S R V Q+ DP +
Sbjct: 205 TSQNIRHTSQRSVTQVKDPSH 225


>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 507 YHRYPTLTIGEPFTAGLPFRHRV 575
           YH YPT+ I  P ++ +P RH +
Sbjct: 527 YHLYPTVIIYTPPSSSIPHRHHL 549



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 504 KYHRYPTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGY 641
           ++H YPT+ I  P ++ +P RH      PT + I  +  I+    Y
Sbjct: 586 RHHPYPTVIIHTPPSSSIPHRHHP---YPTVIYIPPSPSIYFRHPY 628


>SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 364 VLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTP 504
           VL P      H      F  PHG+ +     + V+D  KH +  +TP
Sbjct: 397 VLTPVKSFSSHGMTKGKFLQPHGVAVSTIGQIVVSDSLKHHLQVFTP 443


>SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 412 IFYMPHGLTLDHHDNVWVTDVAKHQV 489
           +F  P G+T D  DN+ V+D   H+V
Sbjct: 636 LFDGPEGVTCDDEDNILVSDYHNHRV 661


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,146,414
Number of Sequences: 59808
Number of extensions: 507600
Number of successful extensions: 1232
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)