Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1908
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    84   9e-17
U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical pr...    59   3e-09
U41992-9|AAK93854.1|  294|Caenorhabditis elegans Hypothetical pr...    31   0.91 
L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleo...    29   2.8  
AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc fi...    29   2.8  
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 41/90 (45%), Positives = 55/90 (61%)
 Frame = +1

Query: 250 GTPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAYIFYMPH 429
           G  V FHR+ RVWDE +FN+   + N D G I   TI ++      V+  +GA +FYMPH
Sbjct: 71  GHIVAFHRSGRVWDEKSFNDHETF-NKDLGVINNKTIAIISREK-KVIDEFGAGLFYMPH 128

Query: 430 GLTLDHHDNVWVTDVAKHQVYKYTPSTTDI 519
           GLT+D++ + WVTDV  HQV+K    T  I
Sbjct: 129 GLTIDNNGDYWVTDVGSHQVHKIDAKTQKI 158



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
 Frame = +3

Query: 525 LTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAY 704
           +++GE    G    H   FC PT VA+A  G IFVADGYCN++I+KF+A G L+  I A 
Sbjct: 160 MSLGEKMVPGEDQAH---FCKPTDVAVAKNGHIFVADGYCNSRILKFDAKGNLMAQINAA 216

Query: 705 SD---TWSLNLPHSVTLLEHLD 761
           ++        +PHS++L+E ++
Sbjct: 217 TEENQPSEFVVPHSLSLIEDMN 238


>U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical
           protein T19B4.1 protein.
          Length = 663

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
 Frame = +1

Query: 259 VIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLD-PGSGSVLH-SWGAYIFYMPHG 432
           ++F RA RVWD +TF+  N     DK PI +  ILV+   G+ + L    G   FY+PHG
Sbjct: 372 LVFQRAGRVWDASTFDNYNIL--LDKKPIADPVILVISYSGNQTKLERKLGGGQFYLPHG 429

Query: 433 LTLDHHDNVWVTDVAKHQVYKY 498
           + +D    V+ TDV  H V K+
Sbjct: 430 IYVDKDGFVYTTDVGSHTVAKW 451



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 528 TIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL--LTIPA 701
           T GE    G    H   +C PT +      +++V DGYCN+++V  +  G  +    +P 
Sbjct: 463 TSGELLMPGSDQHH---YCKPTGITRVED-QLYVTDGYCNSRVVVLDLNGKRIRQFGLPG 518

Query: 702 YSDTWSLNLPHSV 740
             D    NLPH +
Sbjct: 519 -EDAGQFNLPHDI 530


>U41992-9|AAK93854.1|  294|Caenorhabditis elegans Hypothetical
           protein F32E10.7 protein.
          Length = 294

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 197 PQQSLNVGQITAVSINSLGRP*YFTGQIEYGTKILSTNPMLIKTSTR 337
           P++S  +G++T   I++L +    +  IEY   +LS+NP   +  T+
Sbjct: 191 PEKSEKLGELTMQYIDALSQAIMISSHIEYSHHVLSSNPKFQQMCTQ 237


>L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleoli
           protein 1 protein.
          Length = 851

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 588 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 686
           P  V I S GE+ VAD + N  +  F+  GT++
Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798


>AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc
           finger protein Ncl-1 protein.
          Length = 851

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 588 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 686
           P  V I S GE+ VAD + N  +  F+  GT++
Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 62  NCEPEAVRDNFDYFNYGANDDVLKNLESQLSKDEVVLRPQEV 187
           N + E +  N +Y+ + + DD L +++    +   + RP+EV
Sbjct: 178 NNKTEKLETNAEYYGFKSYDDSLYDIQPNTKRPAPLYRPEEV 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,961,679
Number of Sequences: 27780
Number of extensions: 386007
Number of successful extensions: 927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)