Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1908
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 244 FFGTPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHS 399
           F G   I+ ++D +W  +    ++    FD+  I   T LV   GS S + S
Sbjct: 111 FDGINYIYVKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPS 162


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 554 TSCEGFANSQGRISV 510
           T CEGF NSQ + SV
Sbjct: 67  TKCEGFCNSQVQPSV 81


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 554 TSCEGFANSQGRISV 510
           T CEGF NSQ + SV
Sbjct: 67  TKCEGFCNSQVQPSV 81


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +2

Query: 401 GELIFFICLM--ALPSIIMITCG*LTS--QNIKYISIRQVPQISDPDYW 535
           G++++F  L   AL +I++I    L    + +KY     + ++SDP+ W
Sbjct: 232 GKVVYFTSLFPYALLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEVW 280


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +2

Query: 401 GELIFFICLM--ALPSIIMITCG*LTS--QNIKYISIRQVPQISDPDYW 535
           G++++F  L   AL +I++I    L    + +KY     + ++SDP+ W
Sbjct: 285 GKVVYFTSLFPYALLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEVW 333


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 289 DENTFNESNAYQNFDKGPIVEDT 357
           +E+ FN+ N +Q  DK   +E+T
Sbjct: 56  NESEFNDENYWQCNDKKTDIEET 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,097
Number of Sequences: 438
Number of extensions: 5238
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)