Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1908
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76020.1 68414.m08826 expressed protein                             32   0.49 
At1g14120.1 68414.m01669 2-oxoglutarate-dependent dioxygenase, p...    28   6.0  

>At1g76020.1 68414.m08826 expressed protein
          Length = 225

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 373 PGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQV 489
           P     LH +G+ +  + H L L +HDN +VT  A H V
Sbjct: 61  PPLKQALHHYGSRVALLLHLLPLPYHDNAYVTSRALHIV 99


>At1g14120.1 68414.m01669 2-oxoglutarate-dependent dioxygenase,
           putative similar to adventitious rooting related
           oxygenase ARRO-1 from Malus x domestica, gi|3492806;
           contains Pfam domain PF03171, 2OG-Fe(II) oxygenase
           superfamily
          Length = 312

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 113 ANDDVLKNLESQLSKDEVVLRPQEVKDWPQQ-SLNVGQITAVSINSLG 253
           A DD+ ++L  +L++   V+ P  ++ WP Q  +N       S+  LG
Sbjct: 124 ATDDLARSLARRLAESYGVVEPNFLRGWPSQFRMNKYHFKPDSVGKLG 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,708,095
Number of Sequences: 28952
Number of extensions: 350705
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)