Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1907
         (779 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9SX91 Cluster: F16N3.12 protein; n=3; Magnoliophyta|Re...    35   2.0  
UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q9SX91 Cluster: F16N3.12 protein; n=3; Magnoliophyta|Rep:
           F16N3.12 protein - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 147

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +3

Query: 42  AFVV-CCMLVLVSEMLIWRIDLSVKIVKMLVYNVVDR*VFSN--RWLR 176
           AFVV CC+  L + +LI  +  ++ +  +LVY++  R  F N  RWLR
Sbjct: 24  AFVVFCCLFWLCAILLIGSLTTTLTVGALLVYDITKRQTFDNVLRWLR 71


>UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 932

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -3

Query: 429 LFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNLWHAHKLNK 289
           +FR +NP K  N  DA DSA G S   + + S P+  NL    K+NK
Sbjct: 164 IFRFVNPRK--NEGDAGDSARGPSCYNSHVVSSPQNYNLSEIKKMNK 208


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,379,805
Number of Sequences: 1657284
Number of extensions: 12379847
Number of successful extensions: 31670
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31653
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)