Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1907
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    23   2.1  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   2.1  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   2.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   3.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   6.3  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   6.3  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   6.3  

>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 683 SKVFGDDDIEVNEVKKTDK 627
           SKVFG+D+  + ++ K++K
Sbjct: 100 SKVFGNDEKALEQIAKSEK 118


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 683 SKVFGDDDIEVNEVKKTDK 627
           SKVFG+D+  + ++ K++K
Sbjct: 160 SKVFGNDEKALEQIAKSEK 178


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 683 SKVFGDDDIEVNEVKKTDK 627
           SKVFG+D+  + ++ K++K
Sbjct: 160 SKVFGNDEKALEQIAKSEK 178


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 564 LRIRSAIKMDPY*TIKTPESSPDTPQPDTVR 472
           LR+R  IK+DP+ T  +  + P +   + VR
Sbjct: 175 LRLREEIKVDPFMTGFSHRNQPTSIDLNAVR 205


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
          beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 45 FVVCCMLVLVS 77
          FVVCC+L++ S
Sbjct: 5  FVVCCLLLMFS 15


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 495 TPQPDTVRDTLAYIP 451
           TP+PD + + L ++P
Sbjct: 353 TPEPDCIHELLGHMP 367


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 680 KVFGDDDIEVNEVKKTDK 627
           KVFG+D+  + ++ K++K
Sbjct: 1   KVFGNDEKALEQIAKSEK 18


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,210
Number of Sequences: 336
Number of extensions: 3484
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)