Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1907
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    30   0.32 
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    29   0.99 
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    28   1.3  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    28   1.3  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   2.3  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    26   7.0  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    25   9.2  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -3

Query: 525 TIKTPESSPDTPQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATT 346
           +I   +S  +T  P  V  T++Y    S   D   T N   + ++   S S   YSD TT
Sbjct: 655 SITGSQSLKETSSPAYVSSTVSYT---SSSVDSSSTYNSTGSSSSDSQSFSGTTYSDPTT 711

Query: 345 TLTS 334
           T+TS
Sbjct: 712 TITS 715


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -3

Query: 519 KTPESSPDTPQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDA 352
           K P++ P T +P+T R TL+Y    SR ++L +T +P + R  S    +AV   ++
Sbjct: 485 KEPKAKPSTERPETHR-TLSY----SRLSELSKTFSP-EIREPSLTKKTAVSMQES 534


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 447 RSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIR 319
           RSR   +FR ++P+K      A DS    S  T+  + L  +R
Sbjct: 443 RSRLKQIFRLIDPVKTMQFQQAEDSIRSKSTVTSATSLLNWVR 485


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 102 SLCAILTFPIPEPTYNTQQTLIATPYF 22
           SL A   FPI +PT N Q  L  T YF
Sbjct: 147 SLVASKFFPIDDPTLNKQVPLCETDYF 173


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 329 GNDVKVVVASLYPTALSDASEVFRALSGFKVRNRSLYRDRSGMYANVS 472
           GN +   VA    +++ D ++VFR+L GFK       RD S     +S
Sbjct: 97  GNIISASVAPQRISSVIDYADVFRSLPGFKNIENGGNRDTSSRIEELS 144


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 437 YRDRSGMYANVSRTVSGCGVSGELSG 514
           YRDR+G+Y    ++ S  G   ELSG
Sbjct: 3   YRDRTGLYITFRQSYSHHGQRLELSG 28


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 17  PSK*GVAISVCCVLYVGSGIGNVN 88
           P   G   S+CC+L++G  +  ++
Sbjct: 95  PQLAGTVFSICCLLFLGDNLSRID 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,531
Number of Sequences: 5004
Number of extensions: 57217
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)