Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1907
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572...    29   4.1  
03_01_0269 + 2080338-2080508,2081086-2081335,2081432-2082648,208...    29   5.5  
01_07_0039 - 40667598-40669880                                         28   9.6  

>04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,
            5724297-5724558,5724662-5724960,5725040-5725453,
            5725533-5725899,5726002-5726146,5726562-5727558
          Length = 1015

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 522  IKTPESSPDTPQPDTVRDTLAYIPDRSRYN 433
            + T E SP TP PD  R T A  PDR  Y+
Sbjct: 966  VHTQEQSPSTPLPDP-RATRAVPPDRFTYS 994


>03_01_0269 +
           2080338-2080508,2081086-2081335,2081432-2082648,
           2082933-2083083,2083247-2083563
          Length = 701

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 164 IRKHSSVNNVIYQHFNNFNT 105
           I KHSS N  I QH NN +T
Sbjct: 22  ISKHSSTNGEIKQHINNIDT 41


>01_07_0039 - 40667598-40669880
          Length = 760

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 494 LHNLTQCVTR*HTYRTDRDITTCFEL*IRLKPETLQMHRTARS 366
           +HNL     R  ++R   D+ T FEL     PE LQ   T+ S
Sbjct: 458 IHNLLMFSHRIPSFRFTCDVGTVFELEHSAVPENLQYENTSAS 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,129,278
Number of Sequences: 37544
Number of extensions: 308194
Number of successful extensions: 656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)