Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1907
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032630-9|CAA21565.1|  369|Caenorhabditis elegans Hypothetical ...    28   6.5  
U00033-1|AAC48292.3|  731|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AL032630-9|CAA21565.1|  369|Caenorhabditis elegans Hypothetical
           protein Y62H9A.9 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 652 LMRSRKPTNIFLKKTIIFDSLVKENTY-KLTSNQEC 548
           L+R+ +PT+I+ KK ++F    +  TY  L  N  C
Sbjct: 149 LVRTNRPTDIYKKKYLLFPVSFRAETYCTLVVNPHC 184


>U00033-1|AAC48292.3|  731|Caenorhabditis elegans Hypothetical
           protein F37C12.7 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/63 (23%), Positives = 36/63 (57%)
 Frame = +2

Query: 401 ALSGFKVRNRSLYRDRSGMYANVSRTVSGCGVSGELSGVLIV*YGSILIALLIRSQFVCI 580
           +LSG   RN+   ++ + + ++++  +   G +G+  GV+++ + +++ ALL +   V I
Sbjct: 268 SLSGLLTRNQEQVKESTAVKSDIALIMYTSGTTGQPKGVILL-HQNVVAALLGQGDGVGI 326

Query: 581 FFN 589
             N
Sbjct: 327 ICN 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,961,938
Number of Sequences: 27780
Number of extensions: 313757
Number of successful extensions: 861
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)