Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1907
(779 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 25 0.79
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 25 0.79
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 23 2.4
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 23 4.2
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 23 4.2
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 23 4.2
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 23 4.2
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 23 4.2
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 23 4.2
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 23 4.2
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 22 5.6
AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein. 21 9.7
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 25.0 bits (52), Expect = 0.79
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 45 FVVCCMLVLVSEMLIW 92
++ CCMLV+VS + W
Sbjct: 249 YIPCCMLVIVSWVSFW 264
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 25.0 bits (52), Expect = 0.79
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 45 FVVCCMLVLVSEMLIW 92
++ CCMLV+VS + W
Sbjct: 249 YIPCCMLVIVSWVSFW 264
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 23.4 bits (48), Expect = 2.4
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 308 CHRFLISGNDVKVVVASLYPTALSDASEVFRALSG--FKVRNRSLYRDRSGMYANVSRTV 481
C + +I+G V A YP A+ V A+ F + +R ++R Y N+ T
Sbjct: 312 CVQAMIAGIVVISAGADAYPPL---AAIVLGAIGSIVFYIISRYVFRSALEDYCNIVATH 368
Query: 482 SGCGVSGEL 508
CG+ G +
Sbjct: 369 LVCGILGSI 377
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 143 NNVIYQHFNNFNT*VYAPY*HFRYQN 66
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 143 NNVIYQHFNNFNT*VYAPY*HFRYQN 66
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 143 NNVIYQHFNNFNT*VYAPY*HFRYQN 66
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 143 NNVIYQHFNNFNT*VYAPY*HFRYQN 66
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 143 NNVIYQHFNNFNT*VYAPY*HFRYQN 66
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 143 NNVIYQHFNNFNT*VYAPY*HFRYQN 66
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 143 NNVIYQHFNNFNT*VYAPY*HFRYQN 66
NN Y ++NN+N Y +Y N
Sbjct: 87 NNYKYSNYNNYNNNYNTNYKKLQYYN 112
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 22.2 bits (45), Expect = 5.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 522 IKTPESSPDTPQPDTVRDTLAYIP 451
I+ +S TP+PD + + L ++P
Sbjct: 322 IRHIKSPYHTPEPDCIHELLGHMP 345
>AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein.
Length = 50
Score = 21.4 bits (43), Expect = 9.7
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +3
Query: 75 SEMLIWRIDLSVK 113
++M+IW +D S+K
Sbjct: 18 NQMMIWALDCSIK 30
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,977
Number of Sequences: 438
Number of extensions: 3976
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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