Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1905
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1WTE7 Cluster: Oligosaccharide translocase; n=1; Lacto...    33   6.8  
UniRef50_Q98S01 Cluster: Putative uncharacterized protein orf272...    33   6.8  
UniRef50_Q09F96 Cluster: Ymf77; n=1; Tetrahymena malaccensis|Rep...    33   6.8  

>UniRef50_Q1WTE7 Cluster: Oligosaccharide translocase; n=1;
           Lactobacillus salivarius subsp. salivarius UCC118|Rep:
           Oligosaccharide translocase - Lactobacillus salivarius
           subsp. salivarius (strain UCC118)
          Length = 510

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = -3

Query: 667 NVFILFSSSYGDFVELKKLNI 605
           N FI+F++++G FVELKK NI
Sbjct: 361 NTFIMFNNAFGHFVELKKKNI 381


>UniRef50_Q98S01 Cluster: Putative uncharacterized protein orf272;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf272 - Guillardia theta (Cryptomonas phi)
          Length = 272

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = -3

Query: 688 RIFSVFFNVFILFSSSYGDFVELKKLNIQVFFFK 587
           RIF +FF   +++SSS+ +F+ + K+N++ F F+
Sbjct: 8   RIFIIFF---LVYSSSFNNFINIGKINLKYFLFE 38


>UniRef50_Q09F96 Cluster: Ymf77; n=1; Tetrahymena malaccensis|Rep:
           Ymf77 - Tetrahymena malaccensis
          Length = 1294

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
 Frame = -3

Query: 685 IFSVFFNVFILFSSSYG-DFVELKKLNIQVFFFKCQ**NKV*NVIRRLNLNLKVHQSSLF 509
           I++    + ++F +    ++ ELKK NI  FFFK     K+  +I +LN+ + +    + 
Sbjct: 223 IYNQIILINLIFENKINHEYQELKKFNIFFFFFK-----KI-YIITKLNILILIRDIKII 276

Query: 508 I--SHCTIYSKKYY*IMCCCSSHSHFEYFSEICFVSLHG--LFNK*ELLRYLLKI 356
              S+  IY+ K   I+  C+ + +  +     +++ +   L NK + + Y++KI
Sbjct: 277 YQWSYILIYTIKIVLILLYCTLYININWLMSNNWINKNSYILNNKLKYIIYIIKI 331


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,679,011
Number of Sequences: 1657284
Number of extensions: 9582142
Number of successful extensions: 16768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16759
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)