Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1904
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.33 
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    29   0.57 
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   7.0  
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    26   7.0  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.3  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = -3

Query: 425 KNIPAQRRVAINNVEKRAK*FNIVVCVK---NVH*NENKSRKVHNSKQSIDFTNPQNDKT 255
           +NI + ++ +IN + +  K  N   C+K   N++ NEN S KV   K+ +  T   +D  
Sbjct: 607 QNIMSFKKCSINGI-RYGKSHNEDTCIKKRRNLNYNENLSCKVDLDKKKMLETLSLSDSP 665

Query: 254 NTLSITLIDN 225
           N  SIT I +
Sbjct: 666 NPESITFISS 675


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 344 KNVH*NENKSRKVHNSKQSIDFTNPQNDKTNTLSI 240
           K+   NEN  ++ H  ++ +D   P ND+T+ LS+
Sbjct: 13  KSFRNNENLEQQFHPLREELDNAGPINDRTSELSL 47


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 619 NSDN*FEISLLNVR*THSCTSLYAHYNSENAMPIQHRNSIS*PDYLVH 762
           N+ N F+I  L++   + C +L   +NS     +Q  N  S   Y+ H
Sbjct: 239 NNLNQFQIKKLSLERQYDCANLEFEHNSRKLEKLQKMNVFSDIFYISH 286


>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 93  DCLFC*YQKSLMRKICKHISL 31
           +C+ C Y+  L+ K CKH  L
Sbjct: 73  ECVSCKYKNQLVLKRCKHFEL 93


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 175 AKYSLHRSDYLSLKLHGQNNS 113
           ++Y L  SD+LS  +H  NNS
Sbjct: 381 SEYDLDASDFLSSSVHKNNNS 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,940
Number of Sequences: 5004
Number of extensions: 56995
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)