Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1904
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0299 + 19281175-19281570                                         32   0.45 
05_03_0417 - 13690127-13690229,13690644-13690705,13691248-136913...    29   3.2  
11_06_0126 - 20378611-20379719,20380081-20381239                       29   5.5  

>06_03_0299 + 19281175-19281570
          Length = 131

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +2

Query: 449 SPAPAAVYLPSMTHLFLSIMRCARTTCSPP*PHYVL*PKLHGQTK*FYY 595
           SPA A+   P++  + ++  R  RTT SPP PHY+  P+LH   + F++
Sbjct: 86  SPASASHQSPTIV-VHITPTR-GRTT-SPPWPHYIASPRLHAAPRSFWF 131


>05_03_0417 -
           13690127-13690229,13690644-13690705,13691248-13691330,
           13691797-13691911,13692228-13692287,13693375-13693474,
           13694781-13694965
          Length = 235

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 323 NKSRKVHNSKQSIDFTNPQNDKTNTLSITLIDNNNAHPYAIP 198
           NK RK  +SK++ +     ND ++     L+   NA PY++P
Sbjct: 100 NKKRKEESSKKNKEKKERANDSSSKGPAHLVARPNAAPYSLP 141


>11_06_0126 - 20378611-20379719,20380081-20381239
          Length = 755

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 155 AVKRVFRSLPLTSLMEWHRDAHYCCR 232
           A KR   S PL  L  W  D H CCR
Sbjct: 42  AFKRGITSDPLGLLTSWKEDDHDCCR 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,457,356
Number of Sequences: 37544
Number of extensions: 323265
Number of successful extensions: 711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)