Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1904
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024498-11|AAF39802.1|  310|Caenorhabditis elegans Serpentine r...    30   1.6  
U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine rec...    29   3.8  
U64853-4|AAB04977.1|  286|Caenorhabditis elegans Egg laying defe...    29   5.0  
AF283983-1|AAG13398.1|  286|Caenorhabditis elegans C2H2 zinc fin...    29   5.0  
U23454-1|AAC46520.1|  189|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AF024498-11|AAF39802.1|  310|Caenorhabditis elegans Serpentine
           receptor, class x protein108 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 273 VSEINTLF--TVMYFSGFIFILVNIFNTYNYVELFCSFFHIVDSYTSL 410
           ++EI+T    + M  +G I +LVN+F  Y+++ L  + F+I+ S  S+
Sbjct: 3   INEISTRIVGSYMILAGSIGVLVNVFMFYHFISLEKTVFYILCSSKSI 50


>U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 34 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 6   FYYSNVFTLDLCVCRSCALAISDINKISN 92
           FY +N+F   L +C +CA+ I  +  +SN
Sbjct: 109 FYTANIFIRLLMICTNCAITIDRLITLSN 137


>U64853-4|AAB04977.1|  286|Caenorhabditis elegans Egg laying
           defective protein 46 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 39  CVCRSCALAISDINKISNHK--NITIVELFCP 128
           C+CR C +   D+ K++ HK   I   E  CP
Sbjct: 180 CICRLCKVKYEDVFKLAQHKCPRIAHEEYKCP 211


>AF283983-1|AAG13398.1|  286|Caenorhabditis elegans C2H2 zinc finger
           protein EGL-46 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 39  CVCRSCALAISDINKISNHK--NITIVELFCP 128
           C+CR C +   D+ K++ HK   I   E  CP
Sbjct: 180 CICRLCKVKYEDVFKLAQHKCPRIAHEEYKCP 211


>U23454-1|AAC46520.1|  189|Caenorhabditis elegans Hypothetical
           protein C10A4.6 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 703 HYCNEHIKMCSYVSNEHLIS*SRINYRCCQYNITSTI 593
           H  +++     Y+ N  L S  R N+RCCQY  T  +
Sbjct: 123 HMISKYSLTTRYMKNASLAS--RFNFRCCQYCATKNM 157


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 258 FVILWVSEINTLFTVMYFSGFIFILVNIFNTYNYV 362
           F +LW  + N +  V  F G   +++  F  Y+Y+
Sbjct: 103 FYVLWTDDSNKMLVVNSFEGLELLIIAGFMEYHYM 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,090,190
Number of Sequences: 27780
Number of extensions: 327015
Number of successful extensions: 771
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)