Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1904
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.80 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   1.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   7.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   7.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   7.4  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 42  VCRSCALAISDINKISNHKNI 104
           +C  C    S +N + NHK+I
Sbjct: 34  ICNICKRVYSSLNSLRNHKSI 54


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 30  LDLCVCRSCALAISDINKISNHKNI 104
           L+  VC  C      +N ++NHK+I
Sbjct: 399 LNSAVCALCHKVFRTLNSLNNHKSI 423


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 341 NVH*NENKSRKVHNSKQSIDFTNPQNDKTNTLSITLIDNNN 219
           N H N N ++  H+SK      N  ND+ +  S +   +NN
Sbjct: 422 NNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNNRHNN 462


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +3

Query: 261 VILWVSEINTLFTVMYFSGFIFILVNIFNTYNYVELFCSFFHIVDSYTSLCWYIFANR 434
           ++ +VS +  LF +     ++F L++ +    +  LF  FF  +    ++ W    NR
Sbjct: 421 IVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECI----AISWAFGVNR 474


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +3

Query: 261 VILWVSEINTLFTVMYFSGFIFILVNIFNTYNYVELFCSFFHIVDSYTSLCWYIFANR 434
           ++ +VS +  LF +     ++F L++ +    +  LF  FF  +    ++ W    NR
Sbjct: 474 IVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECI----AISWAFGVNR 527


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 337 FTKMKINPEKYITVNKVLISLTHKMTKLIHYR*RLSTTI 221
           FTKM I+ E Y   + +       MT  ++Y    ST++
Sbjct: 237 FTKMTIDGESYTAQDGISGMALSPMTNNLYYSPVASTSL 275


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 337 FTKMKINPEKYITVNKVLISLTHKMTKLIHYR*RLSTTI 221
           FTKM I+ E Y   + +       MT  ++Y    ST++
Sbjct: 237 FTKMTIDGESYTAQDGISGMALSPMTNNLYYSPVASTSL 275


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 337 FTKMKINPEKYITVNKVLISLTHKMTKLIHYR*RLSTTI 221
           FTKM I+ E Y   + +       MT  ++Y    ST++
Sbjct: 237 FTKMTIDGESYTAQDGISGMALSPMTNNLYYSPVASTSL 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,061
Number of Sequences: 438
Number of extensions: 4068
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)