Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1902
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    29   0.98 
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   5.2  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   5.2  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    26   5.2  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   5.2  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   6.9  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   6.9  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   9.2  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   9.2  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 722 LPDTVDEMSTSTHVSAYFRTKEKDG 648
           LPD V+ +ST+ H  AY    E+DG
Sbjct: 671 LPDLVNRLSTTGHFLAYTANLERDG 695


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 229 QPLVPSHR*QVTPQNPGIN*SPRSLALKSTGSMAVDMPRWLAEV 98
           Q   PS R +V PQ PG++ +P SL    + ++        +EV
Sbjct: 109 QMSTPSRRREVDPQRPGVS-TPSSLLFSGSDALTFSQAHPSSEV 151


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 398 THNTSTQFLIFHTTVF*DDYMVIGIQNGYPYVVMDIGDSSEPG--QDPARSPLTRWLP 231
           +H +    +  H  V  D    + ++    Y ++ + DSS PG  Q+  +     WLP
Sbjct: 780 SHTSGLNKVSHHKEVLNDPNSYLTVRKSGTYTLLSVSDSSCPGTIQNVEQKYQVEWLP 837


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 265 SWPGSELSPMSITTYGYPF 321
           SW G ELSP   T Y YP+
Sbjct: 208 SWAG-ELSPEDFTEYAYPY 225


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 570 EYYDFKTY-RFGSPQHGSLRVAEVQNEAILFLCSEV 674
           + Y+ KTY    SP+  +L +++ + E ++FLC ++
Sbjct: 96  QQYERKTYITDASPESQNLFLSKSKEEGVIFLCIQI 131


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 121 MPRWLAEVI*RLNLIKCFSSSARTLRTA*YTFSRRRSS 8
           MP W  E +     ++ F S  RTL TA +TF +  +S
Sbjct: 279 MPNW--EKLPGCEGVRSFPSHPRTLETAFFTFGKEMTS 314


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 174 IDLLAVWPSRVQVRWPWICHDG 109
           +DLL   PS  Q  W WI H G
Sbjct: 283 LDLLLHPPSSAQKNWSWIKHVG 304


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
 Frame = -1

Query: 465 HTNSHSLRNTRTS*KHT-----LTHVTHSQHFNTISNISH---YRFLGRLHGDRHSERIP 310
           +TNS+++ ++R S KHT       H   +   N+++++ H     F+    G + +E IP
Sbjct: 228 YTNSNTVTSSRISLKHTDPTKWQKHAKRTASSNSLTDLLHASNQTFMAPASGLQSTEEIP 287

Query: 309 VCS-DGH-RGQ 283
             S  GH RG+
Sbjct: 288 QFSKTGHSRGR 298


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 294 VHHYIRVSV--LNADHHVVVLKN 356
           VHH +R+S+  LN D HV  L+N
Sbjct: 292 VHHKLRLSISLLNPDGHVSELRN 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,504,742
Number of Sequences: 5004
Number of extensions: 79355
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)