Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1902
         (777 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    31   0.040
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    25   2.6  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   3.5  
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    25   3.5  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   3.5  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 31.1 bits (67), Expect = 0.040
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 239 WLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 108
           W P   G +S + G  +E R KL+++ S P    FD R ++T A
Sbjct: 466 WSPVFMGGRSGILGRESENRRKLVTTVSTPV---FDRRNHSTRA 506


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 704 EMSTSTHVSAYFRTKEKDGFILYLGNPKGTML 609
           ++  + H+   F+ ++K   IL  GNPKGT++
Sbjct: 397 DVEQTIHLVEKFKKRKKLEEILNGGNPKGTLV 428


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 276 TWPGSGEVSIDKMVADNRWYQV 211
           +WP  GE S  K    +RWY V
Sbjct: 556 SWPLCGEKSAKKRKLPSRWYLV 577


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 237 PSCQWRPRRILARFGAVPDVHHYIRVSVL 323
           P+  WRP  +L       D HHY   +VL
Sbjct: 115 PTIVWRPDVVLYNNAGGSDQHHYGDTNVL 143


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 324 SERIPVCSDGHRGQLRTWPGSGEVSID 244
           S+ +PVC  GH   L+ W G   + +D
Sbjct: 811 SDEVPVCEPGH---LKLWDGYSLLYVD 834


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 920,610
Number of Sequences: 2352
Number of extensions: 21178
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)