Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1902
(777 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21318-3|AAC46667.1| 175|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z92825-4|CAB07312.1| 467|Caenorhabditis elegans Hypothetical pr... 31 1.2
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 2.8
U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w... 29 2.8
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 29 2.8
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.8
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.8
Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical pr... 28 6.5
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 8.6
AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein. 28 8.6
AY130767-1|AAM95168.1| 383|Caenorhabditis elegans UDPGalNAc:Glc... 28 8.6
AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus ... 28 8.6
>U21318-3|AAC46667.1| 175|Caenorhabditis elegans Hypothetical
protein K03H9.1 protein.
Length = 175
Score = 31.5 bits (68), Expect = 0.70
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = -1
Query: 369 ISHYRFLGRLHGDRHSERIPVCSDGHRGQLRTWPGSGEVSIDKMVADNRWYQVI 208
+ ++ F + + + E+IP+ DG G L T+ ++ ++K+ D W + +
Sbjct: 42 VENFSFSYHDYNELNREKIPISVDGRSGLLETFKDKSKLPVEKVPEDVLWEKAL 95
>Z92825-4|CAB07312.1| 467|Caenorhabditis elegans Hypothetical
protein C13C4.6 protein.
Length = 467
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 453 VSLCVI*CRLYLVRVLMSAYKFIVCCNMVQIIV 551
V++CV+ RLYL++ Y ++ C ++ II+
Sbjct: 320 VAVCVLVLRLYLIKTYTGWYDSVIVCTLLSIIM 352
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 305 HTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVCFYDVRVLRSECE 457
H+G + C+ P +R CE +E + V+C+SV Y+ L S CE
Sbjct: 1653 HSGFEGDGIKKCTNPLERSCEDVEKFCGRVDHVSCLSVRIYN-GSLSSVCE 1702
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 743 GRHCNPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 627
G + +P V + +S YFRT+++ G L+ GN
Sbjct: 2699 GSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = -2
Query: 251 PLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQV 72
P+ W G +++ G +P+ I+ + DG GY + + ++ ++
Sbjct: 2867 PIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKATKI 2922
Query: 71 LLFFRTYAPNGLIYLL 24
L F T++P+GL++ +
Sbjct: 2923 SLSFLTFSPHGLLFFV 2938
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 743 GRHCNPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 627
G + +P V + +S YFRT+++ G L+ GN
Sbjct: 2699 GSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = -2
Query: 251 PLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQV 72
P+ W G +++ G +P+ I+ + DG GY + + ++ ++
Sbjct: 2867 PIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKATKI 2922
Query: 71 LLFFRTYAPNGLIYLL 24
L F T++P+GL++ +
Sbjct: 2923 SLSFLTFSPHGLLFFV 2938
>U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform a protein.
Length = 650
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -2
Query: 728 PRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTMLRRTK---SVCLKIIIFLH-Y 561
PR P+ + +STSTH + YF + G I +LGN G++ T+ SV I++ L
Sbjct: 305 PRDPNNLRLLSTSTHPTIYFTGIQPTG-IPHLGNFFGSIEPWTELQNSVDKNILMMLSVV 363
Query: 560 *QHNNDLYHITAYNKLISTHEYT 492
QH L + A +TH+ T
Sbjct: 364 DQHAISLGPLPANELRQNTHQMT 386
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 743 GRHCNPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 627
G + +P V + +S YFRT+++ G L+ GN
Sbjct: 513 GSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 551
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = -2
Query: 251 PLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQV 72
P+ W G +++ G +P+ I+ + DG GY + + ++ ++
Sbjct: 681 PIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKATKI 736
Query: 71 LLFFRTYAPNGLIYLL 24
L F T++P+GL++ +
Sbjct: 737 SLSFLTFSPHGLLFFV 752
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 743 GRHCNPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 627
G + +P V + +S YFRT+++ G L+ GN
Sbjct: 2699 GSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = -2
Query: 251 PLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQV 72
P+ W G +++ G +P+ I+ + DG GY + + ++ ++
Sbjct: 2867 PIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKATKI 2922
Query: 71 LLFFRTYAPNGLIYLL 24
L F T++P+GL++ +
Sbjct: 2923 SLSFLTFSPHGLLFFV 2938
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 743 GRHCNPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 627
G + +P V + +S YFRT+++ G L+ GN
Sbjct: 2699 GSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = -2
Query: 251 PLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQV 72
P+ W G +++ G +P+ I+ + DG GY + + ++ ++
Sbjct: 2867 PIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKATKI 2922
Query: 71 LLFFRTYAPNGLIYLL 24
L F T++P+GL++ +
Sbjct: 2923 SLSFLTFSPHGLLFFV 2938
>Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical
protein T02E1.2 protein.
Length = 568
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 417 TLTH-VTHS-QHFNTISNISHYRFLGRLHGDRHSERIPV 307
TL H T+S QHF+ ++ Y+F G L D +E +P+
Sbjct: 342 TLAHFATYSFQHFDEFVHVVPYKFSGTLDRDLRNEIMPI 380
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +2
Query: 284 CPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVC-FYDVRVLRSECEF 460
C +C + G S C++ + E+L C + V VC + V L +C F
Sbjct: 3633 CHKCKKAYFGGESRCQAALDSSQFNPEELL---CGGCSDTSGVQVCPRHGVEYLEYKCRF 3689
Query: 461 VCYIVPVIFSACTHEC 508
C I TH C
Sbjct: 3690 CCSIAVYFCFGTTHFC 3705
>AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein.
Length = 383
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 172 NLSLGSVELPVNDDLVPAVVGNHL-VNGDLAGSWPGSELSPMS 297
NL++GS L + D + AV+GN + DL +W S SP+S
Sbjct: 37 NLTIGSSTLIADVDAMEAVLGNTASTSDDLLDTW-NSTFSPIS 78
>AY130767-1|AAM95168.1| 383|Caenorhabditis elegans
UDPGalNAc:GlcNAc{beta}-R
{beta}1,4-N-acetylgalactosaminyltransferase protein.
Length = 383
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 172 NLSLGSVELPVNDDLVPAVVGNHL-VNGDLAGSWPGSELSPMS 297
NL++GS L + D + AV+GN + DL +W S SP+S
Sbjct: 37 NLTIGSSTLIADVDAMEAVLGNTASTSDDLLDTW-NSTFSPIS 78
>AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus
thuringiensis) toxinresistant protein 4 protein.
Length = 383
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 172 NLSLGSVELPVNDDLVPAVVGNHL-VNGDLAGSWPGSELSPMS 297
NL++GS L + D + AV+GN + DL +W S SP+S
Sbjct: 37 NLTIGSSTLIADVDAMEAVLGNTASTSDDLLDTW-NSTFSPIS 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,845,106
Number of Sequences: 27780
Number of extensions: 474354
Number of successful extensions: 1379
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -