Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1901
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q81WZ9 Cluster: Membrane protein, putative; n=11; Bacil...    33   8.0  

>UniRef50_Q81WZ9 Cluster: Membrane protein, putative; n=11; Bacillus
           cereus group|Rep: Membrane protein, putative - Bacillus
           anthracis
          Length = 385

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
 Frame = +2

Query: 17  IIYGGILTTATKVHSIA*LILFNTFTI*IRTWVLGPDCRQQTRW---LLRKK----CKTY 175
           I+Y  +L T T   SI+ ++L +T      TW+ GP  R   RW   +LRK     CK Y
Sbjct: 327 ILYSLLLFTITATISISAMVLCSTLPF--HTWITGPSPRATVRWAKIVLRKHHEKVCKPY 384


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,948,428
Number of Sequences: 1657284
Number of extensions: 10261067
Number of successful extensions: 20694
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 20312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20694
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)