Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1901
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    29   0.59 
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    26   4.2  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    26   4.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   5.5  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 197 HYLYSSLPVPQAGTDECIEEESWRNLAASFDNLKMFYLMTSTL*LVFI*LDPISDHGR 370
           +Y Y   P   +  D   E  S+ N   SFDN+ + Y+ TS+   V   LDP  ++ R
Sbjct: 152 NYPYVLGPTCDSDIDLIREYFSFENGVCSFDNMTVKYVSTSSKSPVMYILDPAYENDR 209


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 227 QAGTDECIEEESWRNLAASFDNLKMF 304
           +  T ECI++ SWR  +A F++L+ +
Sbjct: 69  EVNTSECIDQGSWRKPSA-FESLRSY 93


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = -2

Query: 284 KRRLSSANFLLRCIHPFRLEEPGARSTDNEIQFV------LCCKFYISF 156
           K R +   F L+CI+  + +E   +   NE+  +      L CKFY  F
Sbjct: 48  KHRQTKQRFALKCINKKKHDEHKIKKLRNEVLLLQSLNHPLLCKFYSEF 96


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 275 LSSANFLLRCIHPFRLEEPGARSTDNEIQFVLCC 174
           L+  + LLR I P+RL +P   S +  ++ V  C
Sbjct: 286 LNGIDLLLRRISPYRLRDPTQGSEEEMMENVFDC 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,286
Number of Sequences: 5004
Number of extensions: 46665
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)