Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1901
         (657 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1672|AAF52796.1| 4345|Drosophila melanogaster CG15828-P...    28   9.7  
AE014134-1671|AAS64667.1| 4374|Drosophila melanogaster CG15828-P...    28   9.7  

>AE014134-1672|AAF52796.1| 4345|Drosophila melanogaster CG15828-PA,
           isoform A protein.
          Length = 4345

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 474 DSLVAHLLINRVK-LSSCSYKILTRSLTQSQPLTSVDAREVQRAL*NV*HCLXVTADRDT 650
           D+  +++ I + K ++SC  +  T S+ Q+ P T  D + +   L +  HC  +T D + 
Sbjct: 259 DTDSSYVTIRKTKDINSCRQRYATHSVLQTTPYTFRDDKTIWPILKSQSHC-NLTIDNNV 317

Query: 651 Y 653
           Y
Sbjct: 318 Y 318


>AE014134-1671|AAS64667.1| 4374|Drosophila melanogaster CG15828-PB,
           isoform B protein.
          Length = 4374

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 474 DSLVAHLLINRVK-LSSCSYKILTRSLTQSQPLTSVDAREVQRAL*NV*HCLXVTADRDT 650
           D+  +++ I + K ++SC  +  T S+ Q+ P T  D + +   L +  HC  +T D + 
Sbjct: 259 DTDSSYVTIRKTKDINSCRQRYATHSVLQTTPYTFRDDKTIWPILKSQSHC-NLTIDNNV 317

Query: 651 Y 653
           Y
Sbjct: 318 Y 318


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,271,225
Number of Sequences: 53049
Number of extensions: 482477
Number of successful extensions: 1318
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)