Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1899
(793 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D43642-1|BAA07757.1| 364|Homo sapiens YL-1 protein protein. 50 7e-06
BT019357-1|AAV38164.1| 364|Homo sapiens transcription factor-li... 50 7e-06
BT019356-1|AAV38163.1| 364|Homo sapiens transcription factor-li... 50 7e-06
BC003151-1|AAH03151.1| 364|Homo sapiens vacuolar protein sortin... 50 7e-06
AL592424-12|CAO72042.1| 375|Homo sapiens vacuolar protein sorti... 50 7e-06
AL592424-11|CAI16385.1| 364|Homo sapiens vacuolar protein sorti... 50 7e-06
AK222939-1|BAD96659.1| 364|Homo sapiens transcription factor-li... 48 3e-05
AK222935-1|BAD96655.1| 364|Homo sapiens transcription factor-li... 48 3e-05
>D43642-1|BAA07757.1| 364|Homo sapiens YL-1 protein protein.
Length = 364
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +2
Query: 80 RARRSNAGNRMAKLLDEEEEDDFYKTTYGGF 172
RA R AGNR++ LL+ EEED+FY+TTYGGF
Sbjct: 7 RAPRKTAGNRLSGLLEAEEEDEFYQTTYGGF 37
Score = 30.7 bits (66), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 627 KSLERFEQIELEXXXXXXXXXXXXGPVLKYHSFAVPV 737
+SLE +E++E + GP++ YHS VP+
Sbjct: 185 RSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPL 221
>BT019357-1|AAV38164.1| 364|Homo sapiens transcription factor-like
1 protein.
Length = 364
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +2
Query: 80 RARRSNAGNRMAKLLDEEEEDDFYKTTYGGF 172
RA R AGNR++ LL+ EEED+FY+TTYGGF
Sbjct: 7 RAPRKTAGNRLSGLLEAEEEDEFYQTTYGGF 37
Score = 30.7 bits (66), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 627 KSLERFEQIELEXXXXXXXXXXXXGPVLKYHSFAVPV 737
+SLE +E++E + GP++ YHS VP+
Sbjct: 185 RSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPL 221
>BT019356-1|AAV38163.1| 364|Homo sapiens transcription factor-like
1 protein.
Length = 364
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +2
Query: 80 RARRSNAGNRMAKLLDEEEEDDFYKTTYGGF 172
RA R AGNR++ LL+ EEED+FY+TTYGGF
Sbjct: 7 RAPRKTAGNRLSGLLEAEEEDEFYQTTYGGF 37
Score = 30.7 bits (66), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 627 KSLERFEQIELEXXXXXXXXXXXXGPVLKYHSFAVPV 737
+SLE +E++E + GP++ YHS VP+
Sbjct: 185 RSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPL 221
>BC003151-1|AAH03151.1| 364|Homo sapiens vacuolar protein sorting
72 homolog (S. cerevisiae) protein.
Length = 364
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +2
Query: 80 RARRSNAGNRMAKLLDEEEEDDFYKTTYGGF 172
RA R AGNR++ LL+ EEED+FY+TTYGGF
Sbjct: 7 RAPRKTAGNRLSGLLEAEEEDEFYQTTYGGF 37
Score = 30.7 bits (66), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 627 KSLERFEQIELEXXXXXXXXXXXXGPVLKYHSFAVPV 737
+SLE +E++E + GP++ YHS VP+
Sbjct: 185 RSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPL 221
>AL592424-12|CAO72042.1| 375|Homo sapiens vacuolar protein sorting
72 homolog (S. cerevisiae) protein.
Length = 375
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +2
Query: 80 RARRSNAGNRMAKLLDEEEEDDFYKTTYGGF 172
RA R AGNR++ LL+ EEED+FY+TTYGGF
Sbjct: 7 RAPRKTAGNRLSGLLEAEEEDEFYQTTYGGF 37
Score = 30.7 bits (66), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 627 KSLERFEQIELEXXXXXXXXXXXXGPVLKYHSFAVPV 737
+SLE +E++E + GP++ YHS VP+
Sbjct: 185 RSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPL 221
>AL592424-11|CAI16385.1| 364|Homo sapiens vacuolar protein sorting
72 homolog (S. cerevisiae) protein.
Length = 364
Score = 50.4 bits (115), Expect = 7e-06
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +2
Query: 80 RARRSNAGNRMAKLLDEEEEDDFYKTTYGGF 172
RA R AGNR++ LL+ EEED+FY+TTYGGF
Sbjct: 7 RAPRKTAGNRLSGLLEAEEEDEFYQTTYGGF 37
Score = 30.7 bits (66), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 627 KSLERFEQIELEXXXXXXXXXXXXGPVLKYHSFAVPV 737
+SLE +E++E + GP++ YHS VP+
Sbjct: 185 RSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPL 221
>AK222939-1|BAD96659.1| 364|Homo sapiens transcription factor-like
1 variant protein.
Length = 364
Score = 48.4 bits (110), Expect = 3e-05
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +2
Query: 80 RARRSNAGNRMAKLLDEEEEDDFYKTTYGGF 172
RA R AGNR++ LL+ EEED+F++TTYGGF
Sbjct: 7 RAPRKTAGNRLSGLLEAEEEDEFHQTTYGGF 37
Score = 30.7 bits (66), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 627 KSLERFEQIELEXXXXXXXXXXXXGPVLKYHSFAVPV 737
+SLE +E++E + GP++ YHS VP+
Sbjct: 185 RSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPL 221
>AK222935-1|BAD96655.1| 364|Homo sapiens transcription factor-like
1 variant protein.
Length = 364
Score = 48.4 bits (110), Expect = 3e-05
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +2
Query: 80 RARRSNAGNRMAKLLDEEEEDDFYKTTYGGF 172
RA R AGNR++ LL+ EEED+F++TTYGGF
Sbjct: 7 RAPRKTAGNRLSGLLEAEEEDEFHQTTYGGF 37
Score = 30.7 bits (66), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 627 KSLERFEQIELEXXXXXXXXXXXXGPVLKYHSFAVPV 737
+SLE +E++E + GP++ YHS VP+
Sbjct: 185 RSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPL 221
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,464,990
Number of Sequences: 237096
Number of extensions: 851974
Number of successful extensions: 1893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1893
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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