Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1899
         (793 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122237-1|AAM52749.1|  351|Drosophila melanogaster RH74174p pro...    60   3e-09
AE014134-1995|AAF53038.1|  351|Drosophila melanogaster CG4621-PA...    60   3e-09

>AY122237-1|AAM52749.1|  351|Drosophila melanogaster RH74174p
           protein.
          Length = 351

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 25/33 (75%), Positives = 31/33 (93%)
 Frame = +2

Query: 74  AQRARRSNAGNRMAKLLDEEEEDDFYKTTYGGF 172
           A R+RR+NAGN++A LL+EEEEDDFYKT+YGGF
Sbjct: 3   ASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGF 35



 Score = 38.3 bits (85), Expect = 0.012
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 570 MPTQXXXXXXXXXXXXXXXKSLERFEQIELEXXXXXXXXXXXXGPVLKYHSFAVPVCLK 746
           MPTQ               KSLE+F+++ELE            GP ++YHS  +P   K
Sbjct: 168 MPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRTFSGPTIRYHSLTMPAMRK 226



 Score = 29.9 bits (64), Expect = 4.2
 Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +1

Query: 253 DDEPVSDQEVEEKAKRK---VGTKAY 321
           +DEPVSDQE   + KRK   V TKAY
Sbjct: 63  NDEPVSDQEEAPEKKRKRGVVNTKAY 88


>AE014134-1995|AAF53038.1|  351|Drosophila melanogaster CG4621-PA
           protein.
          Length = 351

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 25/33 (75%), Positives = 31/33 (93%)
 Frame = +2

Query: 74  AQRARRSNAGNRMAKLLDEEEEDDFYKTTYGGF 172
           A R+RR+NAGN++A LL+EEEEDDFYKT+YGGF
Sbjct: 3   ASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGF 35



 Score = 38.3 bits (85), Expect = 0.012
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 570 MPTQXXXXXXXXXXXXXXXKSLERFEQIELEXXXXXXXXXXXXGPVLKYHSFAVPVCLK 746
           MPTQ               KSLE+F+++ELE            GP ++YHS  +P   K
Sbjct: 168 MPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRTFSGPTIRYHSLTMPAMRK 226



 Score = 29.9 bits (64), Expect = 4.2
 Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +1

Query: 253 DDEPVSDQEVEEKAKRK---VGTKAY 321
           +DEPVSDQE   + KRK   V TKAY
Sbjct: 63  NDEPVSDQEEAPEKKRKRGVVNTKAY 88


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,394,014
Number of Sequences: 53049
Number of extensions: 285253
Number of successful extensions: 673
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)