Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1892
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 80 3e-16
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 66 5e-12
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 45 1e-05
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 44 2e-05
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 44 2e-05
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 41 2e-04
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 40 3e-04
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 40 3e-04
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 40 4e-04
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 40 5e-04
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 39 7e-04
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 38 0.002
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 36 0.005
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 35 0.012
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 34 0.020
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 31 0.19
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 29 0.58
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 28 1.8
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 27 4.1
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 4.1
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 26 5.4
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy... 26 5.4
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 7.1
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 25 9.4
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 25 9.4
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 80.2 bits (189), Expect = 3e-16
Identities = 33/81 (40%), Positives = 54/81 (66%)
Frame = +3
Query: 267 LRSTIMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEI 446
+RST +RE+ ALT+Q + F+++YDPTIED YRK+ E+D +L++
Sbjct: 1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDV 60
Query: 447 LDTAGTEQFASMRDLYIKNGQ 509
LDTAG E++++MR+ Y++ G+
Sbjct: 61 LDTAGQEEYSAMREQYMRTGE 81
Score = 60.5 bits (140), Expect = 3e-10
Identities = 27/64 (42%), Positives = 41/64 (64%)
Frame = +2
Query: 509 GFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADLEHQREVAHAEGAALAQ 688
GF++VY++T+ +F +I + I RVK + P++LV NK DLE +R V+ AEG LA+
Sbjct: 82 GFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAK 141
Query: 689 MWGC 700
C
Sbjct: 142 SMHC 145
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 66.1 bits (154), Expect = 5e-12
Identities = 31/72 (43%), Positives = 47/72 (65%)
Frame = +2
Query: 509 GFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADLEHQREVAHAEGAALAQ 688
G+V+VYS+T+ +F+ +K +++ I G+E VPI++VGNK+DL QR V EG ALA
Sbjct: 80 GYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKALAN 139
Query: 689 MWGCPSSKLQQR 724
W C ++ R
Sbjct: 140 EWKCAWTEASAR 151
Score = 46.0 bits (104), Expect = 6e-06
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +3
Query: 333 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFA 476
+LTVQ+V F+E Y PTIE+ + K I+ EI+DTAG ++++
Sbjct: 21 SLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYS 68
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/65 (33%), Positives = 40/65 (61%)
Frame = +2
Query: 482 ARSVYKKWSGFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADLEHQREVA 661
AR+ Y+ +G V+VY +TN +F+++ I R + ++L G+K+DL++QR+V+
Sbjct: 79 ARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDI-RAMAPSTICVVLAGSKSDLQNQRQVS 137
Query: 662 HAEGA 676
E A
Sbjct: 138 TEEAA 142
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = +2
Query: 515 VVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADLEHQREVAHAEGAALAQ 688
++VY +TNH +F + + E + +G + V I+LVGNK DL +R+V EG A+
Sbjct: 88 IIVYDITNHNSFVNTEKWIEDVRAERGDD-VIIVLVGNKTDLADKRQVTQEEGEKKAK 144
Score = 33.5 bits (73), Expect = 0.035
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 282 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDNSPCVLEILDTA 458
+R+F +L +F+ F Y TI DF K + +++ L++ DTA
Sbjct: 9 LRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 68
Query: 459 GTEQFASMRDLYIKN 503
G E+F S+ YI++
Sbjct: 69 GQERFRSLIPSYIRD 83
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = +2
Query: 494 YKKWSGFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADLEHQREVAHAEG 673
Y+ G +++Y +T+ ++F +++ + + SE V +L+GNK D E QR+V+ +G
Sbjct: 79 YRGAMGILLLYDVTDKKSFDNVRTWFSNVEQ-HASENVYKILIGNKCDCEDQRQVSFEQG 137
Query: 674 AALAQMWG 697
ALA G
Sbjct: 138 QALADELG 145
Score = 33.5 bits (73), Expect = 0.035
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 336 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNGQA 512
L ++F F + TI DF + IE+D L+I DTAG E+F ++ Y +
Sbjct: 25 LLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 84
Query: 513 L 515
+
Sbjct: 85 I 85
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 688 DVGLSFVEASAKSRTNVNEMF 750
++G+ F+EASAK+ NV+E F
Sbjct: 143 ELGVKFLEASAKTNVNVDEAF 163
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 348 FVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDL 491
F G F + Y+PTI + Y +I VD + L + DTAG E++ +R L
Sbjct: 33 FTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSL 80
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 336 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDL 491
L + F G F E Y PT+ + Y ++EVD L + DTAG E + +R L
Sbjct: 22 LLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDRLRPL 73
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 336 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDL 491
L + F G F E Y PT+ + Y ++EVD L + DTAG E + +R L
Sbjct: 22 LLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPL 73
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 345 QFVSGCFMEKYDPTI-EDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNGQAL** 521
Q+V+ F + Y TI DF KE+ VD+ L++ DTAG E+F S+ + +
Sbjct: 27 QYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVL 86
Query: 522 YIH*QTTKRFKTSNQ*RN*LLV 587
+K F+T + R+ L+
Sbjct: 87 VYDVNNSKSFETLDSWRDEFLI 108
Score = 34.7 bits (76), Expect = 0.015
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 515 VVVYSLTNHQTFQDIKPMK-ELITRVKGS--ERVPILLVGNKADLEHQ-REVAHAEGAAL 682
V+VY + N ++F+ + + E + + S E P +L+GNK D+E Q R V+ ++ A
Sbjct: 85 VLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVSKSKALAF 144
Query: 683 AQMWG 697
Q G
Sbjct: 145 CQARG 149
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 39.5 bits (88), Expect = 5e-04
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +2
Query: 488 SVYKKWSGFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADLEHQREVAHA 667
S Y+ G ++VY +T+ +F ++K + I R E V LLVGNK+D+ ++ V ++
Sbjct: 76 SYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRY-AVEGVNRLLVGNKSDMVDKKVVEYS 134
Query: 668 EGAALAQMWGCP 703
A P
Sbjct: 135 VAKEFADSLNIP 146
Score = 34.3 bits (75), Expect = 0.020
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 336 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNGQA 512
L ++F + E Y TI DF + E++ L+I DTAG E+F ++ Y +
Sbjct: 24 LLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHG 83
Query: 513 L 515
+
Sbjct: 84 I 84
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 345 QFVSGCFMEKYDPTI-EDFYRKEIEVDNSPCVLEILDTAGTEQFASM 482
QFV+ F +Y TI DF K++ VD+ L++ DTAG E+F S+
Sbjct: 27 QFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSL 73
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 336 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEIL--DTAGTEQFASMRDLYIKNGQ 509
L + F SG F E+Y PT+ + Y +I + V+E+ DTAG E++ +R L N
Sbjct: 30 LLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSN 89
Query: 510 AL 515
+
Sbjct: 90 VI 91
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 336 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDL 491
L + + + F Y PT+ D Y + + + P L + DTAG E + +R L
Sbjct: 19 LLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPL 70
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 348 FVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDL 491
F G F +Y PT+ + Y + VD L + DTAG E++ +R +
Sbjct: 28 FTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPM 75
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 34.3 bits (75), Expect = 0.020
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +3
Query: 333 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDNSPCV-LEILDTAGTEQFASMRDLYIKN 503
+L ++FV F + + TI F + + +D + V LEI DTAG E++ S+ +Y +N
Sbjct: 29 SLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRN 87
Score = 29.5 bits (63), Expect = 0.58
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 688 DVGLSFVEASAKSRTNVNEMFAEIVVK*TLVQK 786
+ L F E SAK+ NVNE+F I K L K
Sbjct: 150 EANLLFFETSAKTAENVNELFTAIAKKLPLEDK 182
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +2
Query: 515 VVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADLEHQREVAHA 667
++++ +T+ T++++ + RV E +PI+L GNK D++ ++ A A
Sbjct: 86 IIMFDVTSRITYKNVPHWWRDLVRV--CENIPIVLCGNKVDVKERKVKAKA 134
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 351 VSGCFMEKYDPTIE-DFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNGQ 509
++G F +KY T+ + + + + DTAG E+ +RD Y GQ
Sbjct: 30 LTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQ 83
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 342 QSTHSFRPHPNPTRPL*IRALL--CSVNHNCGLPHNVIET 229
Q THS RP PN + PL +R+ S N N P + T
Sbjct: 589 QQTHSSRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNT 628
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 416 FDFFSVEILYRRIIFFHKTS*YKLHSQRTLSDPTRTQHDHFK 291
FD SV L+RR + + ++ K HS++ S+P+ +H +
Sbjct: 104 FDHASVTSLHRRSLSSNTSTPRKYHSRKPYSEPSVIDKEHLQ 145
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 393 DFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIK 500
+F + I +DN +I DTAG E++ ++ Y +
Sbjct: 46 EFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYR 81
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 485 RSVYKKWSGFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKAD 637
R + + +G V + + + + K + + ++ RVP L++GNK D
Sbjct: 82 RDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKID 132
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -2
Query: 308 QHDHFKFAHYCAP*ITIAVFHTML*KRIHTV---RYKMSLLCWFMTHSDAITELHLLKLI 138
Q D +A AP I ++ T ++ V +Y + + WF+ HS I+ L+ I
Sbjct: 141 QRDSIVYAADSAPIIQVSTLETTDPNKLWKVSSKQYDLREVTWFLDHSSLISRLYFDVKI 200
Query: 137 D 135
D
Sbjct: 201 D 201
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 769 ISPQFLQTSRSRWCDSLLKLRRRT 698
I PQ L+T + RW D +++R T
Sbjct: 651 IFPQILETGKCRWSDCKYEIQRLT 674
>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 368 GKI*SDDRGFLQKRN-RSGQFSLCFRNF 448
G I DD+G LQK N ++G+ L F +F
Sbjct: 175 GSIHEDDKGLLQKDNLKNGEQVLLFNSF 202
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 605 VPILLVGNKADLEHQRE 655
VPIL+VGNK + H+ +
Sbjct: 534 VPILIVGNKTKVNHEND 550
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +1
Query: 391 RISTEKKSKWTILLVF 438
RIST+ KS+W +L+++
Sbjct: 98 RISTQDKSRWVLLIIW 113
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 390 EDFYRKEIEVDN--SPCVLEILDTAGTEQFASMRDLYIKNGQA 512
+DFYRK+ ++DN S ++++ +F + D+ I G A
Sbjct: 16 KDFYRKKSKIDNFRSRAAYKLIELNSKYRFINKEDVVIDVGFA 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,798
Number of Sequences: 5004
Number of extensions: 67129
Number of successful extensions: 190
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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