Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1892
         (792 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            36   0.002
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    28   0.29 
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   2.7  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   3.5  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 494 YKKWSGFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADLEHQREVAHAEG 673
           Y+     +VVY + N  +F   K   + + R + S  + I L GNKADL + R V + E 
Sbjct: 94  YRGAQAAIVVYDIQNSDSFARAKTWVKELQR-QASPNIVIALAGNKADLANSRVVDYEEA 152

Query: 674 AALA 685
              A
Sbjct: 153 KQYA 156



 Score = 27.5 bits (58), Expect = 0.50
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 688 DVGLSFVEASAKSRTNVNEMFAEIVVK 768
           D  L F+E SAK+  NVN++F  I  K
Sbjct: 158 DNRLLFMETSAKTAVNVNDIFLAIAKK 184


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 28.3 bits (60), Expect = 0.29
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 494 YKKWSGFVVVYSLTNHQTFQDIKPMKELITRVKGS-ERVPILLVGNKADLEHQRE 655
           Y +   F++ YS+ +  +F+++    +    +K      PI+LVG K DL   RE
Sbjct: 75  YPQTDVFLICYSVASPSSFENVT--SKWYPEIKHHCPDAPIILVGTKIDLREDRE 127


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 241 CYRNVFTLCAIKCHC 197
           C RN  T+C  KC+C
Sbjct: 803 CKRNGLTICIEKCYC 817


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 650 VDVPSQPYFPQVE--LVHVLIL*HE*SIPSLV*CLETFGGLLMNILLQSLTIFY 495
           + +  + Y+P VE  ++ V    HE   P    C E +  +  NI L+  T+FY
Sbjct: 205 IGIDLREYYPSVEWDILGVPAERHEKYYPC---CAEPYPDIFFNITLRRKTLFY 255


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 831,934
Number of Sequences: 2352
Number of extensions: 16670
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83160600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)