Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1892
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.5  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   9.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 231 FL*HCVEDRNCDLRSTIMREF 293
           FL  C+ED +C LR    R F
Sbjct: 72  FLLQCLEDLDCSLRKLNSRLF 92


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 368 HKTS*YKLHSQRTLSDPTRTQHDHFK 291
           H  S Y+L +  TL+   RT +DH K
Sbjct: 27  HILSKYQLITSTTLNWLPRTHYDHLK 52


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 557 CLETFGGLLMNILLQSLTIFY 495
           C E +  +  NI ++  T+FY
Sbjct: 232 CTEPYSDITFNITMRRKTLFY 252


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 363 FMEKYDPTIEDFYRKEIEVDNSP 431
           F + +DP IED++    + D  P
Sbjct: 61  FADLFDPIIEDYHGGFKKTDKHP 83


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 363 FMEKYDPTIEDFYRKEIEVDNSP 431
           F + +DP IED++    + D  P
Sbjct: 77  FADLFDPIIEDYHGGFKKTDKHP 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,074
Number of Sequences: 438
Number of extensions: 4405
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)