Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1891
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...   119   3e-27
Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    35   0.071
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    35   0.071
U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score =  119 bits (286), Expect = 3e-27
 Identities = 50/84 (59%), Positives = 64/84 (76%)
 Frame = +2

Query: 2   AGIKPHQCLPITLDVGTDNQDLLEDPLYIGLRQKRARGKEYDEFIDEFMEACVQRYGQNT 181
           AGI+P  CLP+ LDVGTDN +LL DP Y GLR+KR RG EYD  +D FM+A  +R+G++T
Sbjct: 219 AGIRPEWCLPVILDVGTDNSELLNDPFYTGLRRKRVRGPEYDTLVDNFMKAATKRFGRDT 278

Query: 182 LLQFEDFALPNAGRLLKKYRNKYC 253
           L+QFEDF   NA RLL +Y+ +YC
Sbjct: 279 LIQFEDFGNQNAYRLLDRYKGEYC 302



 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/79 (56%), Positives = 62/79 (78%)
 Frame = +1

Query: 256 FNDDIQGTASVAVAGLMAAVRVTRRKLSENIYLFLGAGSAANGIANLTVAAMMADGLSER 435
           FNDDIQGTA+V VAGL+A+ R+T++KLS+   +FLGAG AA G+A + V  MM +GLSE 
Sbjct: 304 FNDDIQGTAAVVVAGLLASTRITKKKLSQERIVFLGAGGAATGVAEMCVRQMMDEGLSEE 363

Query: 436 QARERVYMFDVDGLLSTRR 492
           +A  R+YM D++GL++T R
Sbjct: 364 EACGRIYMVDIEGLITTSR 382



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 44/80 (55%), Positives = 53/80 (66%)
 Frame = +3

Query: 501 GSGHAKAFGKDIEPEKDFEACVAKIKPSCLIGCSTVGGAFTPNVLKQMAMNTERPVIFAL 680
           G  H K F KD+   K+    V  +KP  LIG STV GAFT +++K+MA    RP+IFAL
Sbjct: 387 GERHVK-FAKDLPDTKNLLEVVKTVKPGALIGASTVAGAFTEDIIKEMARLNPRPIIFAL 445

Query: 681 SNPTSKAECTAQDAYDHTEG 740
           SNPTSKAECTA+ AY  T G
Sbjct: 446 SNPTSKAECTAETAYRCTNG 465


>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 23/55 (41%), Positives = 32/55 (58%)
 Frame = -1

Query: 467 TSNMYTLSRACLSESPSAIMAATVKFAMPFAADPAPRKR*MFSLSFLLVTLTAAI 303
           T N Y+LS     ++PS I+  TV  + PFA DPA     +  LS ++VTLT+ I
Sbjct: 162 TVNKYSLSLK-FPDAPSIILCYTVIASAPFA-DPATMFNVLIWLSVVIVTLTSTI 214


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 23/55 (41%), Positives = 32/55 (58%)
 Frame = -1

Query: 467 TSNMYTLSRACLSESPSAIMAATVKFAMPFAADPAPRKR*MFSLSFLLVTLTAAI 303
           T N Y+LS     ++PS I+  TV  + PFA DPA     +  LS ++VTLT+ I
Sbjct: 162 TVNKYSLSLK-FPDAPSIILCYTVIASAPFA-DPATMFNVLIWLSVVIVTLTSTI 214


>U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical
           protein C13A10.1 protein.
          Length = 477

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 273 RYGQRCRRRSDGGRQGHEEEAQ*EHLPFPRCWICSERHRELDCGRHDGGRTLREAGPR 446
           ++ +R RR SD    G+ E A  + + FP   + +E    +D  RHD G   RE G R
Sbjct: 11  QFERRHRRDSDTIAIGNRETAS-KTVRFPSAQLTNEDFVRIDSWRHDRGSEERENGRR 67


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 59  QDLLEDPLYIGLRQKRARGKEYDEFIDEFMEACVQRYGQNTLLQFEDFALPNAGRLL 229
           Q ++ D + I L++K AR  E  EF++E +  C++   + T +  + FAL     LL
Sbjct: 588 QQIMIDKIVI-LQRKLARRTEKCEFLEEHVRQCLEELQKKTKI-IQHFALREEASLL 642


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 59  QDLLEDPLYIGLRQKRARGKEYDEFIDEFMEACVQRYGQNTLLQFEDFALPNAGRLL 229
           Q ++ D + I L++K AR  E  EF++E +  C++   + T +  + FAL     LL
Sbjct: 588 QQIMIDKIVI-LQRKLARRTEKCEFLEEHVRQCLEELQKKTKI-IQHFALREEASLL 642


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 387 DAVRCRSSTEEKVNVLTELPPRDPDGR 307
           D V C  ST EK+ V T + PR+P G+
Sbjct: 356 DQVFC-VSTREKIEVRTGIEPREPSGK 381


>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
            R08E3.1b protein.
          Length = 1465

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 425  SPRGRPARECTCSTSTDYCPLDVKEGFRARQGLREG--YRTGERLRGLRCQD 574
            S  G  +   TC+ + D+  +D  E      G+R+G   R   R  GLRC++
Sbjct: 984  SCHGHGSPMATCACNADFGGIDCTEPACVNGGVRDGSVCRCPVRFYGLRCEE 1035


>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
            R08E3.1a protein.
          Length = 1512

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 425  SPRGRPARECTCSTSTDYCPLDVKEGFRARQGLREG--YRTGERLRGLRCQD 574
            S  G  +   TC+ + D+  +D  E      G+R+G   R   R  GLRC++
Sbjct: 984  SCHGHGSPMATCACNADFGGIDCTEPACVNGGVRDGSVCRCPVRFYGLRCEE 1035


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,823,618
Number of Sequences: 27780
Number of extensions: 436391
Number of successful extensions: 1551
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)