Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1891
(749 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.33
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.33
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.33
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.33
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.33
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.33
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.33
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.33
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 26 0.43
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.3
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 5.3
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 7.1
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 7.1
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 7.1
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 22 7.1
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 7.1
DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 21 9.3
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
CPEP + V +TI RRRT
Sbjct: 177 CPEPYVDVTFTIQIRRRT 194
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
CPEP + V +TI RRRT
Sbjct: 177 CPEPYVDVTFTIQIRRRT 194
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
CPEP + V +TI RRRT
Sbjct: 177 CPEPYVDVTFTIQIRRRT 194
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
CPEP + V +TI RRRT
Sbjct: 177 CPEPYVDVTFTIQIRRRT 194
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
CPEP + V +TI RRRT
Sbjct: 177 CPEPYVDVTFTIQIRRRT 194
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
CPEP + V +TI RRRT
Sbjct: 177 CPEPYVDVTFTIQIRRRT 194
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
CPEP + V +TI RRRT
Sbjct: 245 CPEPYVDVTFTIQIRRRT 262
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
CPEP + V +TI RRRT
Sbjct: 245 CPEPYVDVTFTIQIRRRT 262
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.8 bits (54), Expect = 0.43
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
CPEP + + + ++ RRRT
Sbjct: 214 CPEPYIDITFVVIIRRRT 231
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
C EP L + + I RR+T
Sbjct: 227 CDEPYLDITFNITMRRKT 244
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
C EP L + + I RR+T
Sbjct: 227 CDEPYLDITFNITMRRKT 244
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 511 CPEPLLHVEWTIVRRRRT 458
C EP L + + I RR+T
Sbjct: 223 CDEPYLDITFNITMRRKT 240
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 437 RPARECTCSTSTDYCPLDVKE 499
RP +CT S D C +KE
Sbjct: 412 RPKYDCTLEKSQDDCLKAIKE 432
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 437 RPARECTCSTSTDYCPLDVKE 499
RP +CT S D C +KE
Sbjct: 412 RPKYDCTLEKSQDDCLKAIKE 432
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 437 RPARECTCSTSTDYCPLDVKE 499
RP +CT S D C +KE
Sbjct: 412 RPKYDCTLEKSQDDCLKAIKE 432
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 547 KTSRPALPRSSLAVLLVVQRWAALS 621
KTS P LP + L +++W++++
Sbjct: 102 KTSNPCLPHRNSDRDLNIRKWSSIA 126
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.8 bits (44), Expect = 7.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 452 TLSRACLSESPSAIMAATVKFAMPFAADPAP 360
TL LS A+ AATV+F A+P P
Sbjct: 676 TLLEVALSLGSEALSAATVRF---IEAEPQP 703
>DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor
protein.
Length = 405
Score = 21.4 bits (43), Expect = 9.3
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +3
Query: 369 ICSERHRELDCGRHDGGRTLREAGPRESVHVRRRRT 476
+ + RHR L+ + R R + +R RRT
Sbjct: 224 VIASRHRNLEATESENVRPRRNVLIERAKSIRARRT 259
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,649
Number of Sequences: 438
Number of extensions: 5100
Number of successful extensions: 23
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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