Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1887
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   3.0  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.0  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    27   4.0  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   9.3  

>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 23  LILPIRVFWLLWTNILGPWFFQEAP 97
           ++ PI +FWL WT    PW     P
Sbjct: 394 IVFPIGIFWLAWTGNY-PWIHWIVP 417


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 702 LHHNVNVTAHLKISRYFSSYTNYCYLV 622
           L + + VTA+LK+S    +YTN+ Y++
Sbjct: 173 LPNKIAVTANLKLSNPTKAYTNHFYIL 199


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 490 H*SSISDRYHS*DGPTDFLNKKYKLTTYYHQMFFIYIINGTY 365
           H +++ DR+ S    T  L K+YK TT++    F+ I + T+
Sbjct: 113 HRTAVRDRHPSYKAKTYSLVKEYKGTTFFDGFDFMNITDPTH 154


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 461 MVSVTYR*SMNRNLVIHSKQVWIAI 535
           ++S TY  S N N  I S+++WI I
Sbjct: 317 IISTTYAISDNTNPTIESRKMWIDI 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,377
Number of Sequences: 5004
Number of extensions: 58062
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)