Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1887
(782 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC013412-1|AAH13412.1| 173|Homo sapiens HSPC171 protein protein. 40 0.008
BC003080-1|AAH03080.1| 173|Homo sapiens HSPC171 protein protein. 40 0.008
Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)... 30 8.2
U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain pro... 30 8.2
AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 8.2
AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 8.2
AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 8.2
AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 8.2
AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 8.2
AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (meros... 30 8.2
>BC013412-1|AAH13412.1| 173|Homo sapiens HSPC171 protein protein.
Length = 173
Score = 40.3 bits (90), Expect = 0.008
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 5 YFWLLLLILPIRVFWLLWTNILGPWF 82
Y W L+ P R +LLW N+LGPWF
Sbjct: 121 YVWSFWLLAPGRALYLLWVNVLGPWF 146
>BC003080-1|AAH03080.1| 173|Homo sapiens HSPC171 protein protein.
Length = 173
Score = 40.3 bits (90), Expect = 0.008
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 5 YFWLLLLILPIRVFWLLWTNILGPWF 82
Y W L+ P R +LLW N+LGPWF
Sbjct: 121 YVWSFWLLAPGRALYLLWVNVLGPWF 146
>Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)
protein.
Length = 3110
Score = 30.3 bits (65), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 754 CKKCSLMTLAICDYD-NVITSQCECH 680
CK C+ T+ D+ NV T QC CH
Sbjct: 1057 CKACNCSTVGSLDFQCNVNTGQCNCH 1082
>U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain protein.
Length = 3110
Score = 30.3 bits (65), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 754 CKKCSLMTLAICDYD-NVITSQCECH 680
CK C+ T+ D+ NV T QC CH
Sbjct: 1057 CKACNCSTVGSLDFQCNVNTGQCNCH 1082
>AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 30.3 bits (65), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 754 CKKCSLMTLAICDYD-NVITSQCECH 680
CK C+ T+ D+ NV T QC CH
Sbjct: 1057 CKACNCSTVGSLDFQCNVNTGQCNCH 1082
>AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 30.3 bits (65), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 754 CKKCSLMTLAICDYD-NVITSQCECH 680
CK C+ T+ D+ NV T QC CH
Sbjct: 1057 CKACNCSTVGSLDFQCNVNTGQCNCH 1082
>AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 30.3 bits (65), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 754 CKKCSLMTLAICDYD-NVITSQCECH 680
CK C+ T+ D+ NV T QC CH
Sbjct: 1057 CKACNCSTVGSLDFQCNVNTGQCNCH 1082
>AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 30.3 bits (65), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 754 CKKCSLMTLAICDYD-NVITSQCECH 680
CK C+ T+ D+ NV T QC CH
Sbjct: 1057 CKACNCSTVGSLDFQCNVNTGQCNCH 1082
>AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 30.3 bits (65), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 754 CKKCSLMTLAICDYD-NVITSQCECH 680
CK C+ T+ D+ NV T QC CH
Sbjct: 1057 CKACNCSTVGSLDFQCNVNTGQCNCH 1082
>AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 30.3 bits (65), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 754 CKKCSLMTLAICDYD-NVITSQCECH 680
CK C+ T+ D+ NV T QC CH
Sbjct: 1057 CKACNCSTVGSLDFQCNVNTGQCNCH 1082
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,291,026
Number of Sequences: 237096
Number of extensions: 1909116
Number of successful extensions: 6228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6228
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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