Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1886
         (777 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7TUJ0 Cluster: DNA primase; n=1; Aggregatibacter actin...    34   4.6  
UniRef50_Q622I4 Cluster: Putative uncharacterized protein CBG021...    33   6.0  

>UniRef50_A7TUJ0 Cluster: DNA primase; n=1; Aggregatibacter
           actinomycetemcomitans|Rep: DNA primase - Actinobacillus
           actinomycetemcomitans (Haemophilusactinomycetemcomitans)
          Length = 319

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 435 YTVYTFVMFFNLSFLVFSPRLLPTSIPVSTSRVK 536
           Y  + F++  NL+FL F  R +P+SIPV TSR++
Sbjct: 270 YICHNFILAQNLTFLTFI-RNVPSSIPVITSRIR 302


>UniRef50_Q622I4 Cluster: Putative uncharacterized protein CBG02177;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG02177 - Caenorhabditis
           briggsae
          Length = 681

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +2

Query: 194 YSIILSSQPH--PTLLPRIVGYVNKMY*DRIVVVLSSKQYSANEILDAIET*SDVR*EES 367
           + +I  SQP+  PTL PR++ Y++ M  D I+  L+   +  N I D  +T S +  E+ 
Sbjct: 584 FYLIADSQPNHTPTLQPRVISYIHDMV-DGILSCLNKADFE-NVIFDTQKTSSQLYDEDL 641

Query: 368 FALST 382
           +A +T
Sbjct: 642 YADAT 646


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,625,097
Number of Sequences: 1657284
Number of extensions: 10071388
Number of successful extensions: 24670
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24660
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)