Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1886
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   4.0  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.2  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   9.2  

>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 544 SYSYLNFSKTRQRYEIRRTFVSEKARR-TEVCIYHLKRTCLDVTNVTGRVKNSGNVI 711
           S S +   + ++R E       +  R   E+ +YH K+T   V N+ G  K+ G+ +
Sbjct: 228 SISNIQLKEAKERLEAANASYQKLRREHKELALYHEKKTHSLVCNLNGERKSFGDFV 284


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 524 GRDRDTGRKKARGENKKGKIEKHNKSIN 441
           G++ D  +++   EN+  K+E+H KS+N
Sbjct: 228 GKEDDLKKREKDLENRLLKVEEHEKSLN 255


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 189 SAHTVTLETSRIQCVRNS*IWIKENRRKRGKGEGK 85
           S H   +  S    V+ S   +  N+RKR KG+ K
Sbjct: 644 SVHNTPMSVSSTLSVKTSSSKVPRNKRKRRKGKSK 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,613
Number of Sequences: 5004
Number of extensions: 45352
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)