Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1886
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53339-2|AAA96198.2|  542|Caenorhabditis elegans Nematode astaci...    29   2.8  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      29   3.7  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    29   3.7  
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    29   4.9  

>U53339-2|AAA96198.2|  542|Caenorhabditis elegans Nematode astacin
           protease protein29 protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 553 YLNFSKTRQRYEIRRTFVSEKARRTEVCIYHLK 651
           YLN  +T +R++I  T       R++ C+YH+K
Sbjct: 393 YLNAEETTRRFDI--TIRQSTTTRSKTCVYHIK 423


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 108 KRGKGEGKVARASFVGRQGAPRAGEVGFG 22
           K+G+G G V  A+  GR+ A  AGE  FG
Sbjct: 717 KKGRGAGAVGAAAAGGRKSAGGAGENPFG 745


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 108 KRGKGEGKVARASFVGRQGAPRAGEVGFG 22
           K+G+G G V  A+  GR+ A  AGE  FG
Sbjct: 717 KKGRGAGAVGAAAAGGRKSAGGAGENPFG 745


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 589 IRRTFVSEKARRTEVCIYHLKRTCLDV 669
           +RR F+  K  R  +C+YH  R    V
Sbjct: 574 LRRRFLRSKPTRYRICVYHFNRKAFQV 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,556,645
Number of Sequences: 27780
Number of extensions: 259096
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)