Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1885
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.5  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.6  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 544 FNNVNFNNQQTREIYAIKCKTL 609
           +NN N+NN      Y   CK L
Sbjct: 333 YNNNNYNNNNYNNNYNNNCKKL 354


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 550 NVNFNNQQT--REIYAIKCKTLLGSG 621
           N++  N+Q   ++ + IKC T LGSG
Sbjct: 51  NIDTPNRQKILKDGFPIKCGTFLGSG 76


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 105 YRFFISILSFFSPNNHIDFIWSKLYR 182
           Y  F S +SF+ P   + F + K+YR
Sbjct: 206 YLIFSSTISFYLPLFVMVFTYYKIYR 231


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 642 FKTSK*FGLV*KITSGFRLHYVYLLVFCWFRNRFPHTKLKK 764
           FKT++   +  ++     L      V  WF+NR   TK KK
Sbjct: 27  FKTTRYLSVCERLNLALSLSLTETQVKIWFQNR--RTKWKK 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,904
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)