Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1881
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    41   0.001
02_04_0592 - 24171698-24172285                                         34   0.11 
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    31   0.79 
03_01_0608 + 4471738-4472115                                           29   3.2  
02_01_0704 - 5254458-5254760,5255091-5255182,5255285-5255501,525...    28   9.7  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +3

Query: 105 LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKN 248
           +K V N +L  Y G WYEI+ FP+  + ++G  + A Y L GD  VKV N
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLN 50


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = +3

Query: 102 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VHSSTAS 269
           E+  V   ++  Y G WYEI+  PN  + ++G+ + A Y L  +G  V V N   +S+  
Sbjct: 13  EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGK 72

Query: 270 RSI*KG 287
           R   KG
Sbjct: 73  RDYIKG 78


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 114 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 230
           V NFN+  + G WY IS   N +     C   E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>03_01_0608 + 4471738-4472115
          Length = 125

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 497 RRLQASCF*RGSRRTLDETFSCHRICSCKR 408
           +RL+A+   RG  ++ DE F C R+C+ KR
Sbjct: 32  QRLKAA---RGREKSSDEVFVCERVCTSKR 58


>02_01_0704 -
           5254458-5254760,5255091-5255182,5255285-5255501,
           5255972-5256068,5256175-5256415,5257100-5257180,
           5257236-5257383
          Length = 392

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 575 QRKXXXXXXXXXXXXTENIKTEKILEALRGIKLNSNHSIKI 697
           QRK            TEN + E++ E+L G+K +++ ++ +
Sbjct: 167 QRKAVVANRKRTARPTENARPEQLAESLEGVKTDTDRNVSV 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,289,777
Number of Sequences: 37544
Number of extensions: 344108
Number of successful extensions: 980
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)