Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1881
         (785 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M16696-1|AAA51764.1|  189|Homo sapiens APOD protein.                   50   1e-05
J02611-1|AAB59517.1|  189|Homo sapiens APOD protein.                   50   1e-05
CR541773-1|CAG46572.1|  189|Homo sapiens APOD protein.                 50   1e-05
CR456838-1|CAG33119.1|  189|Homo sapiens APOD protein.                 50   1e-05
BT019861-1|AAV38664.1|  189|Homo sapiens apolipoprotein D protein.     50   1e-05
BT019860-1|AAV38663.1|  189|Homo sapiens apolipoprotein D protein.     50   1e-05
BC007402-1|AAH07402.1|  189|Homo sapiens apolipoprotein D protein.     50   1e-05
S80440-1|AAB35919.1|   98|Homo sapiens apolipoprotein D protein.       41   0.006

>M16696-1|AAA51764.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKN 248
           +  H G CP      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLN 78



 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = +2

Query: 194 QMLFS*IQTGR*RGEGQERAFIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSV 373
           Q  +S ++ G+ +   QE    DG    IEG A   +   + AKL V  KF         
Sbjct: 63  QANYSLMENGKIKVLNQELR-ADGTVNQIEGEATPVN-LTEPAKLEV--KFSWFMPSAPY 118

Query: 374 QVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDA--KTASIISSRN 529
            +LATDY NYA+ Y+C     +  H  F WIL+RN  L  +      +I++S N
Sbjct: 119 WILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171


>J02611-1|AAB59517.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKN 248
           +  H G CP      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLN 78



 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = +2

Query: 194 QMLFS*IQTGR*RGEGQERAFIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSV 373
           Q  +S ++ G+ +   QE    DG    IEG A   +   + AKL V  KF         
Sbjct: 63  QANYSLMENGKIKVLNQELR-ADGTVNQIEGEATPVN-LTEPAKLEV--KFSWFMPSAPY 118

Query: 374 QVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDA--KTASIISSRN 529
            +LATDY NYA+ Y+C     +  H  F WIL+RN  L  +      +I++S N
Sbjct: 119 WILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171


>CR541773-1|CAG46572.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKN 248
           +  H G CP      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLN 78



 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = +2

Query: 194 QMLFS*IQTGR*RGEGQERAFIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSV 373
           Q  +S ++ G+ +   QE    DG    IEG A   +   + AKL V  KF         
Sbjct: 63  QANYSLMENGKIKVLNQELR-ADGTVNQIEGEATPVN-LTEPAKLEV--KFSWFMPSAPY 118

Query: 374 QVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDA--KTASIISSRN 529
            +LATDY NYA+ Y+C     +  H  F WIL+RN  L  +      +I++S N
Sbjct: 119 WILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171


>CR456838-1|CAG33119.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKN 248
           +  H G CP      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLN 78



 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = +2

Query: 194 QMLFS*IQTGR*RGEGQERAFIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSV 373
           Q  +S ++ G+ +   QE    DG    IEG A   +   + AKL V  KF         
Sbjct: 63  QANYSLMENGKIKVLNQELR-ADGTVNQIEGEATPVN-LTEPAKLEV--KFSWFMPSAPY 118

Query: 374 QVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDA--KTASIISSRN 529
            +LATDY NYA+ Y+C     +  H  F WIL+RN  L  +      +I++S N
Sbjct: 119 WILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171


>BT019861-1|AAV38664.1|  189|Homo sapiens apolipoprotein D protein.
          Length = 189

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKN 248
           +  H G CP      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLN 78



 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = +2

Query: 194 QMLFS*IQTGR*RGEGQERAFIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSV 373
           Q  +S ++ G+ +   QE    DG    IEG A   +   + AKL V  KF         
Sbjct: 63  QANYSLMENGKIKVLNQELR-ADGTVNQIEGEATPVN-LTEPAKLEV--KFSWFMPSAPY 118

Query: 374 QVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDA--KTASIISSRN 529
            +LATDY NYA+ Y+C     +  H  F WIL+RN  L  +      +I++S N
Sbjct: 119 WILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171


>BT019860-1|AAV38663.1|  189|Homo sapiens apolipoprotein D protein.
          Length = 189

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKN 248
           +  H G CP      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLN 78



 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = +2

Query: 194 QMLFS*IQTGR*RGEGQERAFIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSV 373
           Q  +S ++ G+ +   QE    DG    IEG A   +   + AKL V  KF         
Sbjct: 63  QANYSLMENGKIKVLNQELR-ADGTVNQIEGEATPVN-LTEPAKLEV--KFSWFMPSAPY 118

Query: 374 QVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDA--KTASIISSRN 529
            +LATDY NYA+ Y+C     +  H  F WIL+RN  L  +      +I++S N
Sbjct: 119 WILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171


>BC007402-1|AAH07402.1|  189|Homo sapiens apolipoprotein D protein.
          Length = 189

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKN 248
           +  H G CP      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N
Sbjct: 21  QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLN 78



 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = +2

Query: 194 QMLFS*IQTGR*RGEGQERAFIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSV 373
           Q  +S ++ G+ +   QE    DG    IEG A   +   + AKL V  KF         
Sbjct: 63  QANYSLMENGKIKVLNQELR-ADGTVNQIEGEATPVN-LTEPAKLEV--KFSWFMPSAPY 118

Query: 374 QVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDA--KTASIISSRN 529
            +LATDY NYA+ Y+C     +  H  F WIL+RN  L  +      +I++S N
Sbjct: 119 WILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171


>S80440-1|AAB35919.1|   98|Homo sapiens apolipoprotein D protein.
          Length = 98

 Score = 40.7 bits (91), Expect = 0.006
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +2

Query: 320 AKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDA 499
           AKL V  KF          +LATDY NYA+ Y+C     +  H  F WIL+RN  L  + 
Sbjct: 12  AKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPET 68

Query: 500 --KTASIISSRN 529
                +I++S N
Sbjct: 69  VDSLKNILTSNN 80


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,692,099
Number of Sequences: 237096
Number of extensions: 1865751
Number of successful extensions: 3915
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3907
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)