Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1881
(785 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical pr... 35 0.076
AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated... 35 0.076
AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type chlo... 35 0.076
AF016662-10|AAB66055.1| 153|Caenorhabditis elegans Hypothetical... 30 2.2
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 29 3.8
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 29 3.8
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 29 3.8
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 29 3.8
Z11115-15|CAA77456.1| 316|Caenorhabditis elegans Hypothetical p... 29 5.0
U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical pr... 28 6.6
>Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical
protein R07B7.1 protein.
Length = 796
Score = 34.7 bits (76), Expect = 0.076
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 323 KLTVTFKFGEISRDGSVQVLATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 481
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated
chloride channelCLH-6 protein.
Length = 796
Score = 34.7 bits (76), Expect = 0.076
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 323 KLTVTFKFGEISRDGSVQVLATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 481
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type
chloride channel CLH-6 protein.
Length = 796
Score = 34.7 bits (76), Expect = 0.076
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 323 KLTVTFKFGEISRDGSVQVLATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 481
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF016662-10|AAB66055.1| 153|Caenorhabditis elegans Hypothetical
protein C33C12.1 protein.
Length = 153
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 282 KGRPSSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIIT--TPSLTTANTMTRKSLIKC 455
+ RP SP+ +KP+ + L+L A D +KS L ++T P L + K+ I
Sbjct: 81 ENRPKSPSVSLKPKRPEDFLTL----ASDDYKSEILPVLTGFKPILLETLRKSSKNSISQ 136
Query: 456 SSGSSLETRSLK 491
+ G + + LK
Sbjct: 137 NFGQNFREKMLK 148
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 90 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 224
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 90 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 224
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 90 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 224
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 90 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 224
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>Z11115-15|CAA77456.1| 316|Caenorhabditis elegans Hypothetical
protein ZK637.11 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 353 ISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRN-KKLEGDAKTASIISSRN 529
+ ++ VQ+ D NY I ++ +Y + + HQ +S+ KK SI+++
Sbjct: 240 LEKEQRVQLCEPD--NYVIMFDDRYKAELRKHQFHKKNVSKPMKKWSSTTSVISILTTSG 297
Query: 530 TPKR*TLRNLCIPIFQ 577
T + TLR C PI +
Sbjct: 298 T-RISTLRQTCDPIHE 312
>U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical
protein C18H9.3 protein.
Length = 918
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 147 IWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHSSTASRSI*KGRPSSPTTPIKP 320
+W++ F +ES + + + EYK GD+ K+ SST + P P P P
Sbjct: 399 VWFKAGYFTDESLRVQRGENGEYKTIGDLKKLHG--SSTPFEYLEDIEPPRPILPSIP 454
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,976,448
Number of Sequences: 27780
Number of extensions: 310359
Number of successful extensions: 946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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