Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1880
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0611 + 4524866-4525047,4525406-4525468,4525701-4525761,452...    29   5.0  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     29   5.0  
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257...    28   6.6  
10_08_0950 + 21764902-21765912                                         28   8.7  

>07_01_0611 +
           4524866-4525047,4525406-4525468,4525701-4525761,
           4526212-4526304,4526372-4526489,4527003-4527105,
           4527342-4527525,4527974-4528087
          Length = 305

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/66 (30%), Positives = 23/66 (34%)
 Frame = -2

Query: 428 RVWRVICGGWCWA*GEGLAVSSEGGAAATLRKVATXXXXXXXXXXXLGDSPTLIEGRRIV 249
           R WR    G CW       V  EG A A LR+ A               +  L EG    
Sbjct: 3   RGWRRAGEGLCWVLAAERIVGGEGCATAILRREARDGGATCEGEAVRAAAGDLAEGEGRE 62

Query: 248 YNMLNH 231
           Y  L+H
Sbjct: 63  YISLSH 68


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 127 SDTGMAKTLRYKCTSRSSRISYPSCPRIER 216
           +DT +    RYKCT+   R SY    R+ER
Sbjct: 335 ADTFVEHFTRYKCTTAGERKSYGCMQRLER 364


>06_01_0358 +
           2573241-2573324,2573509-2573636,2573769-2573971,
           2574129-2574254,2574522-2574680,2574857-2575050,
           2575251-2575376
          Length = 339

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +3

Query: 54  LKMK--AITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVP-FMPKNRKISK 224
           LKMK  A+  +C   A  P I+ G+  RH             K+Q + P F+PKN  IS 
Sbjct: 212 LKMKNPAVKVICVEPAESPVISGGKPSRH-------------KIQGMGPGFVPKNLDISI 258

Query: 225 LEVIQHVIDYSATFNQR 275
           ++ I  V    A  N +
Sbjct: 259 VDEIITVTAQDAMANAK 275


>10_08_0950 + 21764902-21765912
          Length = 336

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 541 AASVAMGGSRRLGEQKPPNFSSSEDHLSMISYVRSRYD 654
           AA+V+ GG+   G + PP   + E+ L++I   R R++
Sbjct: 33  AAAVSSGGAGGSGRRLPPPCWTHEETLALIEAYRDRWE 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,065,341
Number of Sequences: 37544
Number of extensions: 387689
Number of successful extensions: 1252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)