Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1880
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    30   1.5  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    29   3.4  
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote...    28   5.9  
AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024759-3|AAK68433.1|  355|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024759-2|AAM97964.1|  376|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical ...    28   5.9  

>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +3

Query: 162 MYLSKLQDLVPFMPKNRKISKLEVIQHVIDY 254
           M  S+L+ L+P +P  +K+SK+E+++  I Y
Sbjct: 50  MAFSQLRALLPTLPVEKKLSKIEILRFSIAY 80


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 340  SVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTK 462
            SV++A  S +   P P   HH   +T H  +  S+ T  +K
Sbjct: 1128 SVSSASSSNDVGSPHPLPLHHEHPLTSHDSSAASSSTAPSK 1168


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 340  SVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTK 462
            SV++A  S +   P P   HH   +T H  +  S+ T  +K
Sbjct: 1128 SVSSASSSNDVGSPHPLPLHHEHPLTSHDSSAASSSTAPSK 1168


>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
            protein F45E10.1b protein.
          Length = 1549

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 138  DGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYSATFNQ 272
            DGEN E  +   +LQDLVP  P N        ++ +I   AT +Q
Sbjct: 1501 DGENPENVLKRLQLQDLVP-SPANSSRQHFNPLESLIQLHATKHQ 1544


>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
            protein F45E10.1a protein.
          Length = 1583

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 138  DGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYSATFNQ 272
            DGEN E  +   +LQDLVP  P N        ++ +I   AT +Q
Sbjct: 1535 DGENPENVLKRLQLQDLVP-SPANSSRQHFNPLESLIQLHATKHQ 1578


>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
            protein F45E10.1d protein.
          Length = 1520

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 138  DGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYSATFNQ 272
            DGEN E  +   +LQDLVP  P N        ++ +I   AT +Q
Sbjct: 1472 DGENPENVLKRLQLQDLVP-SPANSSRQHFNPLESLIQLHATKHQ 1515


>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
            protein F45E10.1c protein.
          Length = 1654

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 138  DGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYSATFNQ 272
            DGEN E  +   +LQDLVP  P N        ++ +I   AT +Q
Sbjct: 1606 DGENPENVLKRLQLQDLVP-SPANSSRQHFNPLESLIQLHATKHQ 1649


>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical protein
            F45E10.1b protein.
          Length = 1549

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 138  DGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYSATFNQ 272
            DGEN E  +   +LQDLVP  P N        ++ +I   AT +Q
Sbjct: 1501 DGENPENVLKRLQLQDLVP-SPANSSRQHFNPLESLIQLHATKHQ 1544


>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical protein
            F45E10.1a protein.
          Length = 1583

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 138  DGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYSATFNQ 272
            DGEN E  +   +LQDLVP  P N        ++ +I   AT +Q
Sbjct: 1535 DGENPENVLKRLQLQDLVP-SPANSSRQHFNPLESLIQLHATKHQ 1578


>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical protein
            F45E10.1d protein.
          Length = 1520

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 138  DGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYSATFNQ 272
            DGEN E  +   +LQDLVP  P N        ++ +I   AT +Q
Sbjct: 1472 DGENPENVLKRLQLQDLVP-SPANSSRQHFNPLESLIQLHATKHQ 1515


>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical protein
            F45E10.1c protein.
          Length = 1654

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 138  DGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYSATFNQ 272
            DGEN E  +   +LQDLVP  P N        ++ +I   AT +Q
Sbjct: 1606 DGENPENVLKRLQLQDLVP-SPANSSRQHFNPLESLIQLHATKHQ 1649


>Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical protein
            F45E10.1e protein.
          Length = 1234

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 138  DGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYSATFNQ 272
            DGEN E  +   +LQDLVP  P N        ++ +I   AT +Q
Sbjct: 1186 DGENPENVLKRLQLQDLVP-SPANSSRQHFNPLESLIQLHATKHQ 1229


>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
            UNC-53 protein.
          Length = 1583

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 138  DGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYSATFNQ 272
            DGEN E  +   +LQDLVP  P N        ++ +I   AT +Q
Sbjct: 1535 DGENPENVLKRLQLQDLVP-SPANSSRQHFNPLESLIQLHATKHQ 1578


>AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical
           protein C11D9.1 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 358 PSEETARPSPYAQHHPPQ-ITLHTRTQKSNGTRKTKP 465
           PS++  +P    Q+HPP  +T H  T   + T  TKP
Sbjct: 43  PSQQI-QPQQQQQYHPPDHVTTHNGTTTFHTTNPTKP 78


>AC024759-3|AAK68433.1|  355|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3a protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 616 DLHWN*SSEA---SVLPSVWSLPWQRWPLRGIFININHK 509
           +L+W  SSE        ++W LP Q W  RG+F + NH+
Sbjct: 191 ELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLF-DRNHR 228


>AC024759-2|AAM97964.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3c protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 616 DLHWN*SSEA---SVLPSVWSLPWQRWPLRGIFININHK 509
           +L+W  SSE        ++W LP Q W  RG+F + NH+
Sbjct: 212 ELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLF-DRNHR 249


>AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3b protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 616 DLHWN*SSEA---SVLPSVWSLPWQRWPLRGIFININHK 509
           +L+W  SSE        ++W LP Q W  RG+F + NH+
Sbjct: 212 ELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLF-DRNHR 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,835,158
Number of Sequences: 27780
Number of extensions: 314592
Number of successful extensions: 937
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)