Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1879
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 54 2e-08
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 51 2e-07
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 42 8e-05
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 35 0.015
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 29 1.00
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 28 1.7
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 26 5.3
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 26 7.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 7.0
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 9.3
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 9.3
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 25 9.3
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 253 LGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCMENINAFLEAARQLGVPA 429
LG F + L++G +L L P+ +IK ++ + F+ +NIN FL+ +G+P
Sbjct: 59 LGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPE 118
Query: 430 QETFQTVDLWERQNLNSVVICLQSL 504
F+ D++E +NL V+ C+ +L
Sbjct: 119 IFHFELTDIYEGKNLPKVIYCIHAL 143
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 51.2 bits (117), Expect = 2e-07
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +1
Query: 283 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQL-GVPAQETFQTVDLW 459
L+ G +LC++ I+ S+M F MENI+AF+ A+Q+ VP+Q+ FQT DL+
Sbjct: 31 LQSGVILCRICKEALGANIR-YKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDLF 89
Query: 460 ERQNLNSVVICLQSLGK 510
ER+N V+ + S +
Sbjct: 90 ERRNDEQVLRSIHSFSR 106
Score = 34.3 bits (75), Expect = 0.020
Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 537 IGPKEAEKNVRNFSEEQLRA-GQGVISLQYGS 629
+GPK AEK R FS +Q R +GV SLQYGS
Sbjct: 119 LGPKLAEKKPRVFSAQQQREFREGVNSLQYGS 150
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 42.3 bits (95), Expect = 8e-05
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +1
Query: 241 TREHLGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCMENINAFLEAARQL 417
T ++D+F + L +G +LC+LA +P + ++ + +NAF +
Sbjct: 78 TNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFI 137
Query: 418 GVPAQETFQTVDLWERQNLNSVVICLQSLGKRLE 519
G+ F+T DL R N+ V+ CL +L L+
Sbjct: 138 GMFTPFRFETKDLVRRFNIPKVIYCLHALSYLLD 171
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 34.7 bits (76), Expect = 0.015
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Frame = +1
Query: 271 FYEVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 420
F++ KDG +L KL N+ P+ I K+ N + FKC+EN N + +A+ +G
Sbjct: 145 FFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
Score = 30.3 bits (65), Expect = 0.33
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +1
Query: 268 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 420
+F+ L+DG +L + + I PN + KK+N + M FK +EN N ++ + G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 28.7 bits (61), Expect = 1.00
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 340 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGKRL 516
++ +S A E + AF+E A+Q G+P E W+ + + +L K L
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSL 176
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 741 LRSI*HACNKPFKCARLDSFTCVSCY 664
LRS ACN K R DSF C C+
Sbjct: 55 LRSSSVACNTCLKIIRNDSFHCTKCF 80
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 642 WRPYLNRTEEI*LPDQPGAAPRRSFARSSQLLSVLLTASRRFQ 514
W YLN +E +PD P ++ + +L V+ T R ++
Sbjct: 112 WNAYLNTLDETCMPDSPLLWKDKTCLEGTSMLDVINTNLRVYK 154
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 508 KRLEPTGSRQ*DRKKLRRTCETSPRSSSGLVRESY 612
K +E TG+R+ +K LR+ R V E Y
Sbjct: 485 KTVEDTGNREKSKKSLRKDIREKKRKIDEYVEEKY 519
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +1
Query: 16 PVDPPACLHSVHSDFTFYRVCDLFK*FIKLLLVRNGKQ-PSDQIRICS*SPEKDQQQIQR 192
P PP L S H +FT F+ L R+ + S RI +P D QI
Sbjct: 166 PPIPPEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSHGRIIIINPYDDSSQIDE 225
Query: 193 GAG 201
G
Sbjct: 226 RTG 228
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 432 LCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDV 319
L R+ LS +D++ L+G + C HV D+
Sbjct: 67 LARWVHLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDI 104
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 396 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKAGT 521
P+ + V CTG G+ V +S D L +TG+ T
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRT 157
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 462 ETESQLRRDLLAVTGQKAGTYGKPSIGPKEAEKNVRNFSE 581
E E ++RR + QK T G PS+ ++ E +V + E
Sbjct: 46 EHEERIRRPSVNRAWQKNSTSGGPSVSLEKREADVASLGE 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,663
Number of Sequences: 5004
Number of extensions: 74407
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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